SRR1779922_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779922_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	357518
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	32302	9.035069562931097	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	10084	2.820557286626128	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	3503	0.9798108067286123	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCG	3377	0.9445678259556162	No Hit
ATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTCTT	1363	0.38123954598090165	Illumina PCR Primer Index 3 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	647	0.18096990920736858	No Hit
CTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTC	532	0.14880369659709441	No Hit
CTAATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	426	0.11915483975631995	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATCGT	20	7.925706E-5	69.99189	37
AGGGGGG	3965	0.0	60.900887	70
AACTCGT	30	8.374085E-6	58.326572	37
ATCGTAT	25	2.3901698E-4	55.993507	39
ACATTCG	20	0.0069513237	52.49392	10
CACTCGG	20	0.0069513237	52.49392	10
CAACTCG	20	0.0069513237	52.49392	36
AAGGGGG	4720	0.0	50.93689	69
CGTCTTC	4880	0.0	50.91623	48
CCGTCTT	4870	0.0	50.8052	47
GCCGTCT	4890	0.0	50.668976	46
CTGCTTG	4870	0.0	50.59669	54
CTTGAAA	4945	0.0	50.395546	57
TCTTCTG	4905	0.0	50.37133	50
TATGCCG	4960	0.0	50.236115	43
TCGTATG	4995	0.0	50.23442	40
CGTATGC	4965	0.0	50.185524	41
CTCGTAT	4980	0.0	50.17491	39
ATCTCGT	4985	0.0	50.12458	37
CTTCTGC	4910	0.0	50.106205	51