SRR1779919_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779919_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	183626
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGT	24904	13.56234955834141	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	6258	3.4080141156481107	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCC	2750	1.4976092710182654	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCG	2381	1.2966573361070872	No Hit
ATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGTCTT	693	0.3773975362966029	RNA PCR Primer, Index 14 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCC	434	0.23634997222615534	No Hit
CTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGTC	390	0.21238822388986311	No Hit
CTAATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGT	270	0.1470380011545206	No Hit
CATATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGT	234	0.12743293433391786	No Hit
ATTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGT	215	0.11708581573415529	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGAC	15	0.0022221596	69.99809	34
CTAAGTT	15	0.0022221596	69.99809	9
AACGAAT	15	0.0022221596	69.99809	1
TGGATAC	15	0.0022221596	69.99809	37
AGGGGGG	3015	0.0	63.613525	70
AAGGGGG	3540	0.0	54.08045	69
CTGCTTG	3570	0.0	53.82206	54
CGTATGC	3685	0.0	53.757015	41
GCCGTCT	3635	0.0	53.726185	46
CTTGAAA	3650	0.0	53.69717	57
CCGTCTT	3625	0.0	53.681297	47
CGTCTTC	3620	0.0	53.658756	48
GCTTGAA	3655	0.0	53.623707	56
GTCTTCT	3605	0.0	53.590775	49
TGCTTGA	3620	0.0	53.562073	55
TCTTCTG	3595	0.0	53.54513	50
TTGAAAA	3690	0.0	53.49448	58
ATGCCGT	3690	0.0	53.49448	44
TATGCCG	3705	0.0	53.46683	43
GTATGCC	3695	0.0	53.422092	42