SRR1779916_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779916_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	766896
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	21731	2.8336306357054935	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	6551	0.8542227368508898	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	2881	0.3756702342951326	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCG	2136	0.27852538023408646	No Hit
ATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTCTT	930	0.12126807285472868	TruSeq Adapter, Index 9 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGTT	25	2.3877836E-4	56.013042	27
AGGGGGG	2770	0.0	55.72773	70
AAGGGGG	3190	0.0	47.841896	69
CCGTCTT	3275	0.0	46.804802	47
GCCGTCT	3310	0.0	46.627075	46
CGTCTTC	3320	0.0	46.387268	48
CGTATGC	3385	0.0	46.214306	41
CTCGTAT	3400	0.0	46.11335	39
TCGTATG	3425	0.0	46.083298	40
TATGCCG	3360	0.0	46.037376	43
TGCCGTC	3355	0.0	46.00167	45
ATCTCGT	3425	0.0	45.776756	37
TCTCGTA	3445	0.0	45.714176	38
ATGCCGT	3385	0.0	45.697365	44
GTATGCC	3415	0.0	45.398407	42
GATCTCG	3655	0.0	43.66214	36
AGATCTC	3625	0.0	43.44423	35
GTCTTCT	3580	0.0	42.627285	49
TAAGATC	3620	0.0	42.54025	33
CTGCTTG	3600	0.0	42.19602	54