SRR1779915_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779915_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	331937
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	34502	10.3941410568873	No Hit
CTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTG	3971	1.196311348237768	No Hit
ATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTGGTC	674	0.20305057887490696	No Hit
CTCTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGG	503	0.15153477919002703	No Hit
TCTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGT	439	0.1322540120565047	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCAGA	15	0.0022235445	69.9997	22
GTCGTCT	15	0.0022235445	69.9997	61
CGCCGTG	15	0.0022235445	69.9997	22
TCGTCTC	20	0.0069478215	52.499775	62
AGTCGTC	20	0.0069478215	52.499775	60
ACCGACC	30	5.873453E-4	46.666466	8
CGAATTC	45	1.6821941E-6	46.666466	9
GCGATCT	30	5.873453E-4	46.666466	13
GTTCGAA	40	4.5878278E-5	43.749813	6
TGTTCGA	40	4.5878278E-5	43.749813	5
TCGGTGG	780	0.0	41.73059	45
TCGCCGT	760	0.0	40.986664	52
CTCGGTG	795	0.0	40.94322	44
TCTCGGT	805	0.0	40.86939	43
GCCGTAT	765	0.0	40.71878	54
CGGTGGT	800	0.0	40.68733	46
CGTATCA	780	0.0	40.38444	56
CATTCGA	35	0.0012545052	39.99983	9
CCGACTA	35	0.0012545052	39.99983	36
TGGTCGC	805	0.0	39.99983	49