SRR1779915_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779915_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	331937
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	23029	6.937762286216962	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	6879	2.0723812048671886	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	2596	0.7820761168534992	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCG	2460	0.7411044866947644	No Hit
ATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTCTT	808	0.24341968506071937	TruSeq Adapter, Index 2 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	546	0.16448904460786234	No Hit
CTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTC	382	0.11508207882821138	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	2920	0.0	59.449112	70
GCCGTCT	3335	0.0	52.78599	46
CCGTCTT	3345	0.0	52.523556	47
TCGGGTC	20	0.006944924	52.50531	6
GGCCGAC	20	0.006949064	52.4974	16
CGAATGC	20	0.006949064	52.4974	41
CGTCTTC	3310	0.0	52.233063	48
TCTTCTG	3255	0.0	51.3953	50
TCTCGTA	3650	0.0	51.394714	38
CGTATGC	3530	0.0	51.357235	41
TATGCCG	3565	0.0	51.343884	43
GTCTTCT	3265	0.0	51.23789	49
CTCGTAT	3600	0.0	51.233574	39
TCGTATG	3600	0.0	51.233574	40
TGCCGTC	3560	0.0	51.219376	45
CTTCTGC	3275	0.0	51.188305	51
ATCTCGT	3670	0.0	51.114635	37
CTGCTTG	3290	0.0	51.0613	54
GTATGCC	3605	0.0	50.77419	42
ATGCCGT	3620	0.0	50.757153	44