SRR1779914_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779914_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	369678
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	33259	8.99674852168644	No Hit
CTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTG	3837	1.0379303069157484	No Hit
ATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGTGGTC	573	0.15499975654488501	No Hit
CTCTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGG	562	0.15202419402831654	No Hit
TCTTATACACATCTGACGCTGCCGACGATCTACTCTGTGTAGATCTCGGT	463	0.12524413137920026	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTTAG	20	7.9215126E-5	70.00001	55
GCTACGG	15	0.0022237075	70.0	1
TCGTTGC	20	0.0069483244	52.500004	12
CGTTGCA	20	0.0069483244	52.500004	13
AACGATA	20	0.0069483244	52.500004	23
CAGCGTT	35	0.0012546643	40.0	53
GTTCTAT	35	0.0012546643	40.0	1
ACGATGT	35	0.0012546643	40.0	30
CGTTGAG	45	9.18979E-5	38.888885	49
GCCGTAT	650	0.0	37.69231	54
TCGCCGT	680	0.0	36.544117	52
CGCCGTA	680	0.0	36.544117	53
CGGTGGT	675	0.0	36.296295	46
CTCGGTG	670	0.0	36.044777	44
AGATCTC	700	0.0	36.0	40
GATCTCG	705	0.0	35.74468	41
TGGTCGC	705	0.0	35.74468	49
TCGGTGG	685	0.0	35.255478	45
TCTCGGT	695	0.0	35.2518	43
ACGTTTA	40	0.0024173174	35.000004	27