SRR1779912_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779912_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	343637
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	26315	7.657790051711544	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	6993	2.0349962314884604	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCC	2689	0.7825117784173415	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCG	2601	0.7569033602318725	No Hit
ATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGTCTT	897	0.2610312626405189	TruSeq Adapter, Index 7 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCC	496	0.14433835704537054	No Hit
CTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGTC	388	0.11290984381774954	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACGA	15	0.0022232067	70.002914	1
AGAGTTG	15	0.0022232067	70.002914	22
GCCGACT	15	0.0022244903	69.99272	46
CACTTGA	15	0.0022244903	69.99272	36
GCCGTAT	55	0.0	63.62975	46
AGGGGGG	3300	0.0	61.296654	70
GTATTCT	55	3.6379788E-11	57.266773	49
CAGGTAT	25	2.388179E-4	56.002327	1
TGCCGTA	70	0.0	54.99428	45
AAGGGGG	3790	0.0	53.094746	69
CGAGTTG	20	0.0069507672	52.49454	20
TATGCCG	3995	0.0	52.20984	43
CGTCTTC	3860	0.0	52.13189	48
GCCGTCT	3860	0.0	52.13189	46
CCGTCTT	3855	0.0	52.108723	47
CGTATGC	4010	0.0	51.92727	41
ATGCCGT	4020	0.0	51.885155	44
GTATGCC	4045	0.0	51.737514	42
TGCCGTC	3960	0.0	51.69917	45
TCTTCTG	3890	0.0	51.639874	50