SRR1779910_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779910_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	545250
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	28053	5.1449793672627235	No Hit
CTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTG	7110	1.3039889958734525	No Hit
ATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTC	1293	0.23713892709766163	Illumina Single End PCR Primer 1 (95% over 21bp)
TCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGT	791	0.14507106831728564	No Hit
CTCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGG	787	0.14433745988078864	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACTC	20	0.0069501605	52.49986	1
GGCACGC	20	0.0069501605	52.49986	34
AGGACCG	20	0.0069501605	52.49986	5
TATGCGC	20	0.0069501605	52.49986	3
TCGGTGG	1155	0.0	45.151398	45
GTCGCCG	1170	0.0	44.871677	51
GCCGTAT	1145	0.0	44.628708	54
TGGTCGC	1175	0.0	44.382862	49
TCGCCGT	1160	0.0	44.353333	52
CGGTGGT	1185	0.0	44.00832	46
AGATCTC	1170	0.0	43.974243	40
CTCGGTG	1180	0.0	43.89819	44
GATCTCG	1180	0.0	43.601578	41
ATCTCGG	1185	0.0	43.417606	42
CGTATCA	1205	0.0	42.987442	56
TCTCGGT	1230	0.0	42.11371	43
GGTGGTC	1255	0.0	42.111443	47
GTAGATC	1270	0.0	41.338474	38
CGCCGTA	1240	0.0	41.20957	53
GTATCAT	1245	0.0	41.04407	57