SRR1779910_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779910_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	545250
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	14023	2.571847776249427	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	12444	2.2822558459422284	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	4072	0.746813388353966	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCG	2250	0.41265474552957354	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	1580	0.2897753324163228	No Hit
ATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTCTT	894	0.1639614855570839	Illumina PCR Primer Index 3 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	578	0.10600641907381936	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGTCA	40	1.0659278E-8	61.249435	46
AGGGGGG	2975	0.0	55.88184	70
CGTCTAC	45	2.7002898E-8	54.443943	48
TATGCCG	3405	0.0	49.441544	43
CCGTCTT	3290	0.0	49.361248	47
GCCGTCT	3345	0.0	49.28206	46
CTCGTAT	3435	0.0	49.21352	39
CGTCTTC	3300	0.0	49.21167	48
TCGTATG	3480	0.0	49.180584	40
CGTATGC	3455	0.0	49.02994	41
CGTATGA	50	6.194023E-8	48.999554	41
TCTCGTA	3455	0.0	48.92864	38
ATCTCGT	3460	0.0	48.65562	37
TGCCGTC	3445	0.0	48.359497	45
ATGCCGT	3460	0.0	48.352158	44
AAGGGGG	3425	0.0	48.233135	69
GTATGCC	3485	0.0	48.206158	42
CTGCTTG	3345	0.0	48.131096	54
TCTTCTG	3385	0.0	48.079323	50
CTTGAAA	3465	0.0	47.777336	57