SRR1779909_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779909_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	319594
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	29406	9.201048830703956	No Hit
CTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTG	5813	1.8188701915555363	No Hit
ATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTC	1020	0.31915492781466487	Illumina Single End PCR Primer 1 (95% over 21bp)
CTCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGG	822	0.2572013241800535	No Hit
TCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGT	629	0.19681220548571	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	15	0.0022235687	69.9989	4
ACACGAA	20	0.006947899	52.499176	13
GGGTCTA	40	7.4680065E-7	52.499176	1
GTTCCCG	20	0.006947899	52.499176	6
GGGACTA	30	5.873451E-4	46.665936	1
GATCCTA	75	7.530616E-10	41.999344	1
TCGCCGT	1135	0.0	40.395844	52
TGGTCGC	1155	0.0	40.302402	49
GCCGTAT	1130	0.0	40.26486	54
TCGGTGG	1165	0.0	40.256878	45
GTCGCCG	1150	0.0	40.173286	51
CGGTGGT	1165	0.0	39.95645	46
CTCGGTG	1160	0.0	39.826965	44
CGTATCA	1135	0.0	39.779114	56
TCTCGGT	1165	0.0	39.355606	43
AGATCTC	1180	0.0	38.855328	40
GGTGGTC	1220	0.0	38.7289	47
GATCTCG	1185	0.0	38.691376	41
CGCCGTA	1195	0.0	38.66048	53
GTATCAT	1185	0.0	38.396023	57