SRR1779909_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779909_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	319594
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	14697	4.598647033423656	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	10442	3.267270349255618	No Hit
ATTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	4467	1.3977108456354	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCG	2163	0.6767961851599217	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	1641	0.5134639573959462	No Hit
ATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGTCTT	950	0.2972521386509133	RNA PCR Primer, Index 34 (95% over 23bp)
ATCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	409	0.12797486811391953	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	398	0.12453300124533001	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	383	0.11983954642452613	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCGA	15	0.0022214004	70.01612	26
TGTCGGG	15	0.0022241601	69.99421	51
AGGGGGG	2535	0.0	59.225872	70
GTCCGTT	20	0.0069411425	52.512093	2
CGTCTAC	20	0.0069497405	52.495655	48
AAAACGG	20	0.0069497405	52.495655	67
GTCAACA	20	0.0069497405	52.495655	60
CCGTCTT	2925	0.0	51.568386	47
GCCGTCT	2955	0.0	51.518585	46
CGTCTTC	2990	0.0	51.266663	48
CTGCTTG	3000	0.0	51.212433	54
TATGCCG	3030	0.0	50.936382	43
CGTATGC	3065	0.0	50.811455	41
CTCGTAT	3065	0.0	50.69727	39
TCGTATG	3155	0.0	50.693115	40
GTCTTCT	2970	0.0	50.669212	49
TCTTCTG	2965	0.0	50.63662	50
TCTGCTT	3030	0.0	50.35887	53
ATGCCGT	3075	0.0	50.304783	44
CTTCTGC	2995	0.0	50.24626	51