SRR1779908_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779908_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	351266
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	26253	7.473823256449529	No Hit
CTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTG	5514	1.5697505594051233	No Hit
ATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTC	986	0.2806989574852106	Illumina Single End PCR Primer 1 (95% over 21bp)
CTCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGG	743	0.21152061400761818	No Hit
TCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGT	611	0.1739422545876914	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGATC	25	2.3894638E-4	55.996586	8
GCTAAGT	20	0.006949715	52.496796	8
TGTACGT	20	0.006949715	52.496796	12
ATCGCGG	20	0.006949715	52.496796	41
GGTCCAA	35	2.085241E-5	49.99695	1
AGGTACT	30	5.8755657E-4	46.66382	5
GGGTCTA	30	5.8755657E-4	46.66382	1
GCGATCC	30	5.8755657E-4	46.66382	9
CGGCTTA	30	5.8755657E-4	46.66382	25
CTCGGTG	955	0.0	43.609905	44
TCTCGGT	970	0.0	42.935524	43
TGGTCGC	980	0.0	42.854527	49
GCCGTAT	965	0.0	42.795315	54
TCGGTGG	975	0.0	42.71534	45
TCGCCGT	990	0.0	42.421654	52
AGATCTC	1000	0.0	42.347416	40
ATCTCGG	995	0.0	42.20848	42
CGGTGGT	995	0.0	42.20848	46
GATCTCG	1005	0.0	41.788494	41
CGCCGTA	1005	0.0	41.788494	53