SRR1779907_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779907_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	194645
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	24898	12.791492203755556	No Hit
CTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTG	5017	2.577512908114773	No Hit
ATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTC	911	0.4680315446068483	Illumina Single End PCR Primer 1 (95% over 21bp)
TCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGT	588	0.3020884173752215	No Hit
CTCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGG	568	0.2918133011379691	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGACCGT	15	0.0022221205	70.0	54
CCCATAG	30	8.354069E-6	58.333332	1
CGCGGTC	25	2.3860874E-4	56.000004	39
AGCGTTC	20	0.006943406	52.5	37
GACCGTA	20	0.006943406	52.5	55
TGTGCGC	20	0.006943406	52.5	3
GTGACAT	20	0.006943406	52.5	5
CGATCTG	20	0.006943406	52.5	43
AAAGCGT	20	0.006943406	52.5	35
TGGCGTA	30	5.8673054E-4	46.666664	24
GTCACAC	30	5.8673054E-4	46.666664	43
GAGCATT	30	5.8673054E-4	46.666664	48
CTTTATA	55	1.3051067E-7	44.545452	2
GCCGTAT	835	0.0	43.592815	54
TCGCCGT	860	0.0	43.139534	52
CGCCGTA	865	0.0	42.89017	53
TCGGTGG	865	0.0	42.48555	45
GTCGCCG	875	0.0	42.4	51
CGTATCA	870	0.0	42.241383	56
ATCTCGG	865	0.0	42.080925	42