SRR1779905_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779905_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	280831
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	8787	3.1289280741798446	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	7189	2.5599025748581887	No Hit
ATTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	4111	1.463869729481432	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCG	1488	0.5298560344121553	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	908	0.3233261285256969	No Hit
ATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGTCTT	659	0.23466070341237258	Illumina PCR Primer Index 11 (95% over 22bp)
ATCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	348	0.12391794353187505	No Hit
CTTATACACATCTCCGAGCCCACGAGACGCCGCTCCATCTCGTATGCCGT	332	0.11822056681776584	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	292	0.10397712503249285	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATCC	15	0.0022231496	70.0	44
GGACCTA	15	0.0022231496	70.0	1
GCTCAAG	15	0.0022231496	70.0	1
AGGGGGG	1645	0.0	58.510635	70
ATCGTAT	25	2.3879163E-4	55.999996	39
ATATCGT	25	2.3879163E-4	55.999996	37
CGACTTC	25	2.3879163E-4	55.999996	48
CGTCTTC	1810	0.0	52.983425	48
CCGTCTT	1775	0.0	52.647892	47
GCGAGAA	20	0.0069465945	52.5	13
GACAACG	20	0.0069465945	52.5	70
GCCGACT	20	0.0069465945	52.5	46
GTTCCAC	20	0.0069465945	52.5	64
CCGACTT	20	0.0069465945	52.5	47
GTCTTCA	40	7.463932E-7	52.5	49
TATGCCG	1835	0.0	52.452316	43
TCGTATG	1880	0.0	52.31383	40
TCTTCTG	1815	0.0	52.258953	50
GCCGTCT	1805	0.0	52.160667	46
CGTATGC	1860	0.0	52.123657	41