SRR1779903_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779903_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	424617
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	24531	5.777206282367404	No Hit
CTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTG	6978	1.6433633132917431	No Hit
CTCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGG	940	0.22137596940301493	No Hit
ATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTC	896	0.2110136899841504	Illumina Single End PCR Primer 1 (95% over 21bp)
TCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGT	789	0.18581451048827533	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGGTA	20	0.006948015	52.501945	54
TGGCGTA	20	0.006948015	52.501945	24
CTTAGCG	20	0.006948015	52.501945	30
TAACGGT	20	0.006951252	52.49576	48
CGACAGT	20	0.006951252	52.49576	47
GCCGTAT	1165	0.0	46.86869	54
CGTTTTA	30	5.8775325E-4	46.6629	16
TGGTCGC	1190	0.0	46.47231	49
TCGCCGT	1175	0.0	46.469807	52
CCGTATC	1180	0.0	46.2729	55
CGCCGTA	1185	0.0	46.077656	53
CTCGGTG	1190	0.0	45.878647	44
GTCGCCG	1205	0.0	45.603348	51
TCGGTGG	1205	0.0	45.59798	45
CGTATCA	1200	0.0	45.501682	56
TCTCGGT	1200	0.0	45.496326	43
GTGGTCG	1220	0.0	45.324207	48
CGGTGGT	1225	0.0	45.13921	46
GTAGATC	1245	0.0	44.41931	38
GGTCGCC	1250	0.0	43.961628	50