SRR1779902_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779902_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	347590
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	22827	6.567220000575391	No Hit
CTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTG	5354	1.5403204925343077	No Hit
ATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTC	920	0.26467965131332893	Illumina Single End PCR Primer 1 (95% over 21bp)
CTCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGG	671	0.19304352829483012	No Hit
TCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGT	598	0.1720417733536638	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTTTA	20	0.0069479765	52.500004	31
ACTCTCG	20	0.0069479765	52.500004	9
GCATTCG	20	0.0069479765	52.500004	1
GCCGTAT	805	0.0	46.086956	54
TCGGTGG	835	0.0	45.269463	45
TGGTCGC	835	0.0	45.269463	49
TCGCCGT	820	0.0	45.243904	52
CGGTGGT	845	0.0	45.147926	46
CGCCGTA	835	0.0	44.431137	53
CGTATCA	830	0.0	44.27711	56
GCGAACT	40	4.5881592E-5	43.750004	28
CTCGGTG	875	0.0	43.6	44
ATCTCGG	860	0.0	43.546513	42
CCGTATC	845	0.0	43.49112	55
TCTCGGT	870	0.0	43.448273	43
GTCGCCG	865	0.0	43.294796	51
GTATCAT	825	0.0	43.272724	57
GATCTCG	875	0.0	42.8	41
GTAGATC	880	0.0	42.55682	38
TAGATCT	890	0.0	42.07865	39