SRR1779902_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779902_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	347590
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGT	10472	3.012744900601283	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9450	2.718720331424955	No Hit
ATTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGT	4615	1.3277136856641445	RNA PCR Primer, Index 19 (95% over 21bp)
TCTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCG	1759	0.5060559855001583	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCC	1244	0.35789291981932736	No Hit
ATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGTCTT	576	0.16571247734399722	No Hit
ATCTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCC	394	0.11335193762766478	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGGAT	15	0.0022252086	69.9872	3
AGGGGGG	2015	0.0	58.707386	70
ACGCGTA	20	0.006925352	52.543312	27
CGCGTAA	20	0.006933245	52.52818	28
GTTTCGC	20	0.0069530057	52.4904	1
TAGCGCG	20	0.0069530057	52.4904	2
CGGATTG	20	0.0069530057	52.4904	5
CAGTATA	20	0.0069530057	52.4904	1
TATGCCG	2280	0.0	51.26255	43
GCCGTCT	2250	0.0	51.01289	46
CGTCTTC	2270	0.0	50.717594	48
CCGTCTT	2250	0.0	50.701836	47
GTATGCC	2310	0.0	50.596806	42
ATGCCGT	2310	0.0	50.596806	44
CGTATGC	2335	0.0	50.354816	41
TCGTATG	2385	0.0	50.333466	40
TGCCGTC	2320	0.0	50.22788	45
CTCGTAT	2385	0.0	50.039974	39
TCTCGTA	2400	0.0	49.727222	38
ATCTCGT	2410	0.0	49.375668	37