SRR1779899_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779899_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	408184
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	31276	7.662230758677459	No Hit
CTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTG	7674	1.8800344942476923	No Hit
ATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGTGGTC	1229	0.30108970464300416	Illumina Single End PCR Primer 1 (95% over 21bp)
CTCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGG	872	0.2136291476392999	No Hit
TCTTATACACATCTGACGCTGCCGACGAAGAGGATAGTGTAGATCTCGGT	805	0.19721498147894084	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTGCAA	25	2.39152E-4	55.989025	10
GGGCCGA	20	0.0069441274	52.509007	32
TGGCACT	20	0.0069474936	52.502575	41
TTTATAA	20	0.0069508613	52.49614	30
TCGCCGT	1350	0.0	44.594776	52
GCCGTAT	1350	0.0	44.583855	54
GTCGCCG	1365	0.0	44.36115	51
TGGTCGC	1365	0.0	43.8483	49
ATCTCGG	1365	0.0	43.59188	42
CTCGGTG	1365	0.0	43.59188	44
CGGTGGT	1375	0.0	43.529408	46
TCGGTGG	1375	0.0	43.529408	45
GATCTCG	1370	0.0	43.432785	41
AGATCTC	1375	0.0	43.27485	40
CGTATCA	1385	0.0	43.215115	56
GTAGATC	1385	0.0	43.215115	38
CGCCGTA	1410	0.0	42.94537	53
TCTCGGT	1390	0.0	42.807854	43
GTATCAT	1400	0.0	42.25207	57
GATCCTA	75	7.566996E-10	41.991768	1