SRR1779899_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779899_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	408184
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	15760	3.861003861003861	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	13264	3.2495149246418285	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	4693	1.1497265938890304	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCG	2806	0.6874350782980224	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	1664	0.4076592909080219	No Hit
ATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGTCTT	925	0.22661348803480783	RNA PCR Primer, Index 19 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	521	0.12763851596338907	No Hit
CTTAAACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	506	0.12396370264390569	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGAA	15	0.0022165324	70.05837	28
CGTCTAC	25	2.8422564E-6	69.98113	48
AGGGGGG	2870	0.0	57.66738	70
CTTTATA	100	0.0	55.991768	2
CGTTTCA	20	0.0069461465	52.505146	58
ATCGTAT	40	7.486269E-7	52.48585	39
CGTCTTC	3205	0.0	51.858093	48
GCCGTCT	3190	0.0	51.77288	46
CCGTCTT	3160	0.0	51.71074	47
TATGCCG	3255	0.0	51.384003	43
CGTATGC	3290	0.0	51.156418	41
TCGTATG	3345	0.0	51.15213	40
TCTTCTG	3260	0.0	50.87586	50
CTTGAAA	3290	0.0	50.85605	57
CTCGTAT	3335	0.0	50.78091	39
GTATGCC	3305	0.0	50.60663	42
TCTCGTA	3360	0.0	50.507214	38
TGCCGTC	3285	0.0	50.48867	45
ATGCCGT	3310	0.0	50.318764	44
CTGCTTG	3285	0.0	50.28796	54