Basic Statistics
Measure | Value |
---|---|
Filename | SRR1779897_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 70961 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 66 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 24848 | 35.01641746875044 | No Hit |
CTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTG | 2056 | 2.8973661588760025 | No Hit |
ATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTGGTC | 241 | 0.33962317329237185 | No Hit |
TCTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGT | 228 | 0.32130325108158 | No Hit |
CTCTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGG | 197 | 0.2776172827327687 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GAGCTGC | 15 | 0.0022162872 | 70.0 | 58 |
AATGCCC | 15 | 0.0022162872 | 70.0 | 62 |
GAGGATG | 20 | 0.0069253165 | 52.500004 | 4 |
CCTTATG | 20 | 0.0069253165 | 52.500004 | 15 |
CCCCTTA | 20 | 0.0069253165 | 52.500004 | 13 |
GTTCTCC | 20 | 0.0069253165 | 52.500004 | 61 |
GGATGCC | 20 | 0.0069253165 | 52.500004 | 38 |
AGCTTTA | 20 | 0.0069253165 | 52.500004 | 1 |
GAGTAAA | 20 | 0.0069253165 | 52.500004 | 26 |
TAAAAGG | 20 | 0.0069253165 | 52.500004 | 26 |
CCAGAAT | 20 | 0.0069253165 | 52.500004 | 66 |
TTATAGG | 20 | 0.0069253165 | 52.500004 | 36 |
CGCTCTA | 20 | 0.0069253165 | 52.500004 | 47 |
AGTTCTC | 20 | 0.0069253165 | 52.500004 | 60 |
TTCGCTC | 20 | 0.0069253165 | 52.500004 | 45 |
GAGATAC | 20 | 0.0069253165 | 52.500004 | 1 |
GCTTTCG | 20 | 0.0069253165 | 52.500004 | 42 |
GAAGGGC | 20 | 0.0069253165 | 52.500004 | 6 |
AGGTCCA | 20 | 0.0069253165 | 52.500004 | 5 |
TCAGAGA | 30 | 5.8419793E-4 | 46.666664 | 3 |