SRR1779896_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779896_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	215645
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	11520	5.342113195297828	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3212	1.4894850332722762	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	1568	0.7271209626933154	No Hit
TCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCG	1463	0.6784298267986737	No Hit
CTAATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	845	0.39184771267592566	No Hit
ATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTCTT	460	0.2133135477289063	TruSeq Adapter, Index 10 (95% over 21bp)
CTTAAACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	399	0.1850263163996383	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	268	0.12427832780727585	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACCGGA	25	2.8333343E-6	69.999306	28
ATATCGT	40	1.0617441E-8	61.249393	37
AGGGGGG	1680	0.0	61.249393	70
AATATCG	35	2.9647708E-7	59.999405	36
ATCGTAT	35	2.9647708E-7	59.999405	39
AACTCGT	35	2.9647708E-7	59.999405	37
CGGATAA	30	8.357609E-6	58.332752	31
TTAATAC	25	2.3840505E-4	56.012432	3
CGGACTT	25	2.3867852E-4	55.999443	5
ACCGGAT	40	7.456274E-7	52.49948	29
GTGGGAT	20	0.0069446894	52.49948	21
AGTGCCG	20	0.0069446894	52.49948	8
CTGCCGA	20	0.0069446894	52.49948	19
TCTCGGA	20	0.0069446894	52.49948	15
GTGCCGT	20	0.0069446894	52.49948	9
AAGGGGG	1975	0.0	52.27796	69
TATGCCG	2035	0.0	51.252563	43
CGTCTTC	2000	0.0	50.92449	48
CGTATGC	2055	0.0	50.924072	41
CCGTCTT	1970	0.0	50.81168	47