SRR1779893_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779893_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	239892
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	11832	4.932219498774448	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3047	1.2701549030397012	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCG	1623	0.676554449502276	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	1549	0.6457072349223818	No Hit
CTAATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	806	0.33598452637019993	No Hit
ATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGTCTT	532	0.22176646157437513	Illumina PCR Primer Index 11 (95% over 22bp)
CTTAAACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	352	0.1467326963800377	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	266	0.11088323078718756	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCAA	15	0.002221177	70.01251	25
TCGCAAG	15	0.002221177	70.01251	26
GTTTGCC	15	0.002223015	69.99792	2
AGCCGTC	15	0.002223015	69.99792	45
CGGCATG	15	0.002223015	69.99792	37
AAAAGCG	15	0.002223015	69.99792	67
ACCGAAG	15	0.002223015	69.99792	15
GCCGTAT	20	7.917019E-5	69.99792	46
CGTATGA	55	0.0	63.634468	41
AGGGGGG	1860	0.0	59.64876	70
CGTCTAC	30	8.361449E-6	58.331596	48
CCGAAAT	25	2.3875621E-4	55.998333	47
CAACTCG	25	2.3875621E-4	55.998333	36
GGTCGCA	20	0.0069404566	52.509384	24
CACGCTA	20	0.0069404566	52.509384	23
CAGTTGT	20	0.006946183	52.49844	4
CGGTTCA	20	0.006946183	52.49844	62
AAGCCGT	20	0.006946183	52.49844	44
CGATCCT	20	0.006946183	52.49844	56
TCGGTTC	20	0.006946183	52.49844	61