SRR1779891_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779891_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	269611
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	15280	5.667424548701648	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	4354	1.6149192725816084	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	2297	0.8519682060450056	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCG	2152	0.7981870175920123	No Hit
CTAATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	892	0.3308470351728972	No Hit
ATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTCTT	533	0.19769223065824465	TruSeq Adapter, Index 2 (95% over 21bp)
CTTAAACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	418	0.15503818464380162	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	336	0.12462399531176398	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	2070	0.0	59.008568	70
TCATGTA	25	2.3879632E-4	55.998962	31
AGCCGTC	70	0.0	54.998978	45
AAGCCGT	65	3.6379788E-12	53.84515	44
TCTGGTA	20	0.006941709	52.508766	24
CCTTAGT	20	0.006946804	52.499027	41
CCGCTTT	20	0.006946804	52.499027	67
GCGTCGG	20	0.006946804	52.499027	13
TCTTAAG	55	2.2755557E-9	50.908146	50
CTTAAGT	35	2.0834144E-5	49.999073	46
GGGTCTA	35	2.0834144E-5	49.999073	1
CGTCTAC	35	2.0834144E-5	49.999073	48
GCCGTCT	2455	0.0	49.184425	46
CCGTCTT	2430	0.0	49.114315	47
GTCTTCT	2270	0.0	48.72156	49
CGTATGC	2635	0.0	48.6139	41
CGTCTTC	2365	0.0	48.54033	48
TCTTCTG	2275	0.0	48.46064	50
TATGCCG	2665	0.0	48.46064	43
CGTCTTA	130	0.0	48.460636	48