SRR1779889_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779889_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	236892
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	32596	13.759856812387081	No Hit
CTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTG	2935	1.2389612143930568	No Hit
ATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTGGTC	389	0.164209850902521	No Hit
TCTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGT	315	0.13297198723468923	No Hit
CTCTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGG	307	0.1295949208922209	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCTAT	15	0.0022227184	70.0	1
GTTCGCA	25	2.3871502E-4	55.999996	35
CGACTTG	20	0.0069452594	52.5	58
AACGTTA	30	5.8699027E-4	46.666664	8
ATCGTCA	30	5.8699027E-4	46.666664	14
CGAAGCA	30	5.8699027E-4	46.666664	16
TCTCGGT	520	0.0	44.423077	43
TCGGTGG	525	0.0	44.0	45
ATCTCGG	520	0.0	43.75	42
GTCGCCG	540	0.0	43.425926	51
AGATCTC	525	0.0	43.333332	40
CTCGGTG	525	0.0	43.333332	44
GCCGTAT	510	0.0	43.23529	54
GATCTCG	535	0.0	43.17757	41
TGGTCGC	545	0.0	43.027523	49
CGGTGGT	555	0.0	42.882885	46
TCGCCGT	525	0.0	42.666668	52
TAGATCT	550	0.0	41.363636	39
CGTATCA	550	0.0	40.727272	56
CCGTATC	545	0.0	40.458717	55