SRR1779888_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779888_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	228418
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	15656	6.854100815172185	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	4016	1.758180178444781	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCC	2245	0.9828472362073041	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCG	2007	0.8786522953532558	No Hit
CTAATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	907	0.39707903930513355	No Hit
ATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGTCTT	541	0.23684648320184926	TruSeq Adapter, Index 7 (95% over 21bp)
CTTAAACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	485	0.2123300265303085	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCC	359	0.15716799901934173	No Hit
CATATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	261	0.11426419984414539	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGTCA	20	7.921912E-5	69.98774	46
CCGTATA	15	0.0022241606	69.98774	2
AGGGGGG	1995	0.0	61.23075	70
CGAGAAC	25	2.3838702E-4	56.014717	23
CGTCTAC	25	2.3864518E-4	56.00245	48
TACGACA	25	2.3864518E-4	56.00245	49
GCCGACT	20	0.006949754	52.490807	46
CGCTATG	20	0.006949754	52.490807	10
CGGTATG	20	0.006949754	52.490807	43
AACTTGG	35	2.0789395E-5	50.013138	27
CGTATTC	35	2.0816355E-5	50.00219	48
AAGGGGG	2455	0.0	49.615208	69
CTGCTTG	2310	0.0	49.547623	54
CGTATGC	2500	0.0	49.27137	41
TATGCCG	2495	0.0	49.229855	43
CCGTCTT	2350	0.0	48.99142	47
CTTGAAA	2465	0.0	48.98794	57
TCGTATG	2565	0.0	48.97777	40
GCCGTCT	2375	0.0	48.91775	46
GTATGCC	2520	0.0	48.88033	42