SRR1779887_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779887_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	58428
Sequences flagged as poor quality	0
Sequence length	76
%GC	81

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	34401	58.87759293489423	No Hit
CTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTG	3496	5.983432600807832	No Hit
TCTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGT	361	0.617854453344287	No Hit
ATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTGGTC	349	0.5973163551721777	No Hit
CTCTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGG	303	0.5185869788457589	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	96	0.1643047853768741	No Hit
TCTTTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGG	94	0.1608817690148559	No Hit
CTATACACATCTGACGCTGCCGACGAATAGAGAGGTGTAGATCTCGGTGG	86	0.14718970356678304	No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	61	0.10440199904155542	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGGGGG	45	2.6446287E-8	54.444447	70
AAAAAGG	345	0.0	52.75362	70
TTGGGGG	20	0.006919207	52.5	2
TCTTTAT	20	0.006919207	52.5	1
CATGCAA	20	0.006919207	52.5	10
TCGGTGG	555	0.0	46.036034	45
TCTCGGT	555	0.0	46.036034	43
CTCGGTG	555	0.0	46.036034	44
ATCTCGG	560	0.0	45.625	42
TAAAAAA	560	0.0	45.625	64
GTATCAT	545	0.0	45.59633	57
CCGTATC	525	0.0	45.333332	55
CGTATCA	525	0.0	45.333332	56
GATCTCG	565	0.0	45.22124	41
CGGTGGT	565	0.0	45.22124	46
AGATCTC	565	0.0	45.22124	40
TAGATCT	565	0.0	45.22124	39
CATTAAA	550	0.0	45.18182	61
TCGCCGT	535	0.0	45.140186	52
GCCGTAT	535	0.0	45.140186	54