SRR1779886_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779886_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	96352
Sequences flagged as poor quality	0
Sequence length	76
%GC	65

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	32565	33.79794918631684	No Hit
CTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTG	7608	7.8960478246429755	No Hit
ATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGTC	985	1.022293258053803	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	806	0.8365161076054468	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGT	804	0.8344403852540684	No Hit
TCTTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	240	0.24908668216539354	No Hit
CTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGG	174	0.1805878445699103	No Hit
TATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGT	139	0.14426270342079045	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACCTA	15	0.0022187058	70.00001	50
GAATATA	15	0.0022187058	70.00001	27
CGCTAAT	15	0.0022187058	70.00001	26
ACCAGCA	15	0.0022187058	70.00001	2
AACGACC	15	0.0022187058	70.00001	10
TGGTCTA	15	0.0022187058	70.00001	35
TTTGAGC	25	2.3800206E-4	56.000004	8
GCACTTA	25	2.3800206E-4	56.000004	32
CTTTATA	60	8.367351E-11	52.500004	2
AAGTAAC	20	0.0069328193	52.5	30
TACCAGC	20	0.0069328193	52.5	1
TTTGTGA	20	0.0069328193	52.5	31
CAGCAGA	20	0.0069328193	52.5	4
CAATTTG	20	0.0069328193	52.5	36
TAAGAGC	20	0.0069328193	52.5	37
GCGAGGA	20	0.0069328193	52.5	42
AGAAATG	30	5.8524765E-4	46.666668	29
GGAACTG	30	5.8524765E-4	46.666668	36
CGCCGTA	1250	0.0	43.4	53
GCCGTAT	1245	0.0	43.293175	54