SRR1779885_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779885_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	245310
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	25898	10.557254086665852	No Hit
CTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTG	4219	1.7198646610411317	No Hit
ATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGTC	889	0.3623985976927153	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	521	0.21238433003138885	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGT	411	0.1675431087195793	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCC	15	0.0022228134	70.0	23
GCGCGTC	25	2.3873182E-4	56.000004	6
CGTTACA	25	2.3873182E-4	56.000004	2
GTCTGCC	20	0.006945552	52.500004	23
AGAGCGT	20	0.006945552	52.500004	25
CCCGAAC	20	0.006945552	52.500004	9
CAGAGTC	30	5.8703154E-4	46.666664	44
GCCGTAT	645	0.0	41.782948	54
TCGCCGT	650	0.0	41.461536	52
ATCTCGG	675	0.0	40.962963	42
GTCGCCG	675	0.0	40.962963	51
CGGTGGT	670	0.0	40.74627	46
GATCTCG	680	0.0	40.661766	41
CCGTATC	665	0.0	40.526314	55
CTCGGTG	685	0.0	40.364964	44
TCGGTGG	685	0.0	40.364964	45
TGGTCGC	680	0.0	40.14706	49
ATGGTCC	35	0.001253839	40.0	8
CGTAAGA	35	0.001253839	40.0	37
CGCCGTA	675	0.0	39.925926	53