SRR1779885_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779885_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	245310
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	11575	4.718519424401777	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	7711	3.1433696139578493	No Hit
ATTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	6021	2.454445395621866	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCG	1995	0.8132566956096368	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	1208	0.492438139496963	No Hit
ATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGTCTT	706	0.2877991113285231	RNA PCR Primer, Index 34 (95% over 23bp)
ATCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	579	0.2360278830867066	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	345	0.1406383759324936	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	2230	0.0	59.95254	70
AGCCGTC	30	8.362702E-6	58.330788	45
AAGCCGT	30	8.362702E-6	58.330788	44
ATTATAC	835	0.0	57.01512	1
TAGCTTC	25	2.3854294E-4	56.008972	28
AACTCGT	25	2.3878341E-4	55.99755	37
GGAACAT	20	0.006941153	52.50841	1
GGACCTA	20	0.006941153	52.50841	1
GTCCATG	20	0.006941153	52.50841	30
CGCGGGA	20	0.006946753	52.497707	63
GCCGACT	40	7.4622585E-7	52.497707	46
CGAATGC	20	0.006946753	52.497707	41
AACGACT	20	0.006946753	52.497707	36
GCCGTAT	20	0.006946753	52.497707	46
CCGTCTT	2495	0.0	51.90154	47
AAGGGGG	2580	0.0	51.81944	69
GCCGTCT	2510	0.0	51.73081	46
CGTCTTC	2505	0.0	51.694347	48
TATGCCG	2650	0.0	51.639256	43
CTGCTTG	2490	0.0	51.302982	54