SRR1779884_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779884_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	52107
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	5902	11.326693150632353	No Hit
CTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTG	1169	2.243460571516303	No Hit
ATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGTC	172	0.3300900071007734	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGT	137	0.26292052891166257	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	131	0.2514057612221007	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGGTGC	15	0.0022129696	70.0	42
CAGATCT	15	0.0022129696	70.0	1
GGAGTAA	15	0.0022129696	70.0	1
GGCGGTG	20	0.0069150305	52.5	41
CGCCGTA	190	0.0	44.210526	53
TGGTCGC	190	0.0	44.210526	49
CGGTGGT	200	0.0	43.749996	46
GATCTCG	200	0.0	43.749996	41
GTGGTCG	200	0.0	43.749996	48
TCGGTGG	200	0.0	43.749996	45
TCGCCGT	195	0.0	43.076923	52
GCCGTAT	195	0.0	43.076923	54
ATCTCGG	205	0.0	42.682926	42
CGTATCA	205	0.0	42.682926	56
CTCGGTG	205	0.0	42.682926	44
GTCGCCG	200	0.0	42.0	51
AGATCTC	210	0.0	41.666664	40
GGTGGTC	210	0.0	41.666664	47
TCTCGGT	210	0.0	41.666664	43
GGTCGCC	205	0.0	40.97561	50