SRR1779884_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779884_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	52107
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	2156	4.13763985644923	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1978	3.7960350816588937	No Hit
CTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	1843	3.5369528086437523	No Hit
TCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCG	378	0.7254303644423974	No Hit
ATCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	191	0.3665534381177193	No Hit
ATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTCTT	174	0.33392826299729406	TruSeq Adapter, Index 10 (95% over 21bp)
CTCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	142	0.27251616865296413	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	56	0.1074711651025774	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGTC	15	0.0022129696	70.0	2
CAGCGCG	15	0.0022129696	70.0	25
CGTATGA	15	0.0022129696	70.0	41
TATGACG	15	0.0022129696	70.0	43
GCAGCGT	15	0.0022129696	70.0	1
CGTTTAC	15	0.0022129696	70.0	14
AGGGGGG	475	0.0	64.10526	70
ATTATAC	315	0.0	58.888885	1
TATGCCG	550	0.0	55.363636	43
CGTCTTC	550	0.0	54.727272	48
GCCGTCT	545	0.0	54.587154	46
TCGTATG	590	0.0	53.983047	40
ATGCCGT	565	0.0	53.893806	44
CCGTCTT	540	0.0	53.796295	47
CTCGTAT	580	0.0	53.706898	39
TCTTCTG	565	0.0	53.274338	50
TGCCGTC	565	0.0	53.274338	45
CGTATGC	580	0.0	53.103447	41
ATCTCGT	575	0.0	52.956524	37
GTATGCC	575	0.0	52.956524	42