SRR1779881_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779881_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	66971
Sequences flagged as poor quality	0
Sequence length	76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	6523	9.740036732316973	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	5560	8.302100909348823	No Hit
CTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	763	1.1392990996102792	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCG	570	0.8511146615699332	No Hit
ATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGTCTT	545	0.8137850711501993	Illumina PCR Primer Index 11 (95% over 22bp)
ATCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	415	0.619671200967583	No Hit
ATTATACACATCTCCGAGCCCACGAGACGCCGCTCCATCTCGTATGCCGT	217	0.32402084484329036	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	175	0.2613071329381374	No Hit
ATTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGACGT	164	0.24488211315345448	No Hit
ATATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGTC	100	0.14931836167893564	No Hit
TATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGTCT	95	0.1418524435949889	Illumina PCR Primer Index 11 (95% over 21bp)
ATTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGA	78	0.11646832210956981	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCCTG	15	0.002215739	70.0	53
CAAGAAT	15	0.002215739	70.0	4
CGACTTC	20	7.8742945E-5	70.0	48
ATTATAC	910	0.0	63.84615	1
TGCATGA	40	1.0468284E-8	61.25	55
CACGTAT	40	1.0468284E-8	61.25	39
AGGGGGG	880	0.0	59.26136	70
CGTCTTA	30	8.294572E-6	58.333332	48
CATCACG	55	3.45608E-11	57.272724	36
TATTAAC	25	2.3747528E-4	56.000004	2
CCGACTT	25	2.3747528E-4	56.000004	47
AGTGTTC	25	2.3747528E-4	56.000004	8
TCACGTA	45	2.6524503E-8	54.444443	38
GCCGTCT	1170	0.0	53.846153	46
CCGTCTT	1160	0.0	53.7069	47
TGCCGTC	1200	0.0	53.66667	45
CGTCTTC	1170	0.0	53.54701	48
ATGCCGT	1210	0.0	53.512398	44
TATGCCG	1225	0.0	53.42857	43
TCTTCTG	1155	0.0	53.333332	50