SRR1779880_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779880_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	184379
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	9582	5.196904202756279	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	7367	3.9955743333025997	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	3097	1.6796923727756417	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCG	1088	0.5900888929867284	No Hit
ATCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	645	0.3498229190959925	No Hit
ATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTCTT	626	0.33951805791331985	TruSeq Adapter, Index 9 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	273	0.14806458436155961	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAGC	15	0.002223164	69.990234	12
CACGGGT	15	0.002223164	69.990234	53
GTTACTC	15	0.002223164	69.990234	18
GCGTCAC	15	0.002223164	69.990234	49
CGTCACG	15	0.002223164	69.990234	50
AGTCGAG	15	0.002223164	69.990234	11
CCCGACG	15	0.002223164	69.990234	12
ATTATAC	1440	0.0	61.744244	1
AGGGGGG	1800	0.0	60.463787	70
ATCGTAT	35	2.9650437E-7	59.99163	39
AGCTTGA	60	1.8189894E-12	58.325195	55
GGGAGCG	25	2.3874013E-4	55.992188	49
CCGTCTT	1990	0.0	54.1633	47
CGTCTTC	1980	0.0	53.90662	48
GCCGTCT	2010	0.0	53.798462	46
ATGCCGT	2060	0.0	53.511955	44
TGCCGTC	2060	0.0	53.511955	45
TATGCCG	2095	0.0	53.453163	43
CGTATGC	2125	0.0	53.35726	41
TCGTATG	2125	0.0	53.192577	40