SRR1779879_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779879_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	221963
Sequences flagged as poor quality	0
Sequence length	76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	26837	12.090753864382803	No Hit
CTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTG	5504	2.479692561372841	No Hit
ATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGTC	1074	0.4838644278550929	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	676	0.3045552637151237	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGT	556	0.25049219915030885	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCAAGCG	15	0.00222293	69.99685	20
AAAGGTC	20	0.0069397325	52.509464	46
CGACGGG	20	0.0069459216	52.497635	29
GCGCGTT	20	0.0069459216	52.497635	24
GATCATA	20	0.0069459216	52.497635	1
GGCCACA	20	0.0069459216	52.497635	40
GTTCATA	20	0.0069459216	52.497635	34
GTTACCG	20	0.006952115	52.485806	13
CGGTGGT	960	0.0	43.393238	46
CTCGGTG	960	0.0	43.38346	44
TCGCCGT	955	0.0	43.253872	52
TGGTCGC	965	0.0	43.168404	49
TCGGTGG	965	0.0	43.158676	45
GCCGTAT	950	0.0	43.09361	54
CGCCGTA	965	0.0	42.786354	53
GTCGCCG	975	0.0	42.72565	51
ATCTCGG	975	0.0	42.716022	42
GATCTCG	975	0.0	42.716022	41
TCTCGGT	980	0.0	42.49808	43
CGTATCA	980	0.0	42.131466	56