SRR1779879_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779879_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	221963
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	9558	4.306123092587503	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	8658	3.9006501083513916	No Hit
ATTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	8510	3.8339723287214538	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCG	1733	0.7807607574235346	No Hit
ATCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	977	0.4401634506652009	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	935	0.4212413780675157	No Hit
ATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTCTT	541	0.243734316079707	TruSeq Adapter, Index 2 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	323	0.14551974878695997	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTATAC	1240	0.0	62.374615	1
TGCCGAC	40	1.0624717E-8	61.245663	45
AGGGGGG	2000	0.0	60.020752	70
CGAATGC	30	8.361434E-6	58.329205	41
GCCGTCA	270	0.0	58.329205	46
GTGCCTC	30	8.361434E-6	58.329205	45
GCCGACT	25	2.3876561E-4	55.996037	46
CCGACTT	25	2.3876561E-4	55.996037	47
CCGTCAT	290	0.0	53.09969	47
AAAACGG	20	0.0069404426	52.508114	67
CAAATTG	20	0.0069404426	52.508114	31
GGAGCTA	20	0.006946631	52.496284	53
CGTCTAC	20	0.006946631	52.496284	48
ATTCCGT	20	0.006946631	52.496284	44
TTGTTCG	20	0.006946631	52.496284	9
ATCGCGC	20	0.006946631	52.496284	8
TCAGCAT	95	0.0	51.5753	53
TATGCCG	2845	0.0	50.066757	43
AAGCACG	35	2.0828558E-5	49.99646	7
AATCTCG	35	2.0828558E-5	49.99646	36