SRR1779875_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779875_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	207288
Sequences flagged as poor quality	0
Sequence length	76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	39837	19.218189186059973	No Hit
CTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTG	7813	3.769152097564741	No Hit
ATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGTC	1167	0.5629848326965382	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	899	0.4336961136196982	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGT	869	0.4192234958125892	No Hit
TCTTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	246	0.11867546601829339	No Hit
CTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGG	228	0.10999189533402803	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCAGTC	15	0.0022225375	69.998314	12
GAACGAG	15	0.0022225375	69.998314	69
CGGTAGA	20	0.0069380766	52.511402	14
GCGACCG	20	0.006944702	52.498734	29
GTGGAAC	20	0.006944702	52.498734	66
GTAGCGA	20	0.006944702	52.498734	22
GTTGTAC	20	0.006944702	52.498734	8
GGAACGA	20	0.006944702	52.498734	68
TAAATTG	20	0.006944702	52.498734	5
GCGCGTC	35	2.0817986E-5	49.99879	6
TCGGTGG	1420	0.0	45.843964	45
CGGTGGT	1400	0.0	45.748894	46
GCCGTAT	1380	0.0	45.65107	54
TGGTCGC	1390	0.0	45.57444	49
ATCTCGG	1410	0.0	45.42444	42
CTCGGTG	1420	0.0	45.351017	44
TCTCGGT	1430	0.0	45.27863	43
GATCTCG	1415	0.0	45.263924	41
TCGCCGT	1385	0.0	45.233566	52
CGCCGTA	1385	0.0	45.233566	53