SRR1779874_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779874_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	148966
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	27295	18.322973027402227	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	3514	2.3589275405126	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	1811	1.215713652779829	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	802	0.5383778848864842	RNA PCR Primer, Index 48 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	747	0.5014567082421493	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCGT	317	0.21280023629553052	No Hit
CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	316	0.21212894217472444	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT	259	0.1738651772887773	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAACTCGTATGCCGT	252	0.16916611844313467	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	222	0.14902729481895197	RNA PCR Primer, Index 48 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCATCTCGTATGCCGTC	187	0.12553200059073882	No Hit
CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	163	0.10942094169139266	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGCTA	20	7.908458E-5	69.995636	26
GCTCGTA	30	8.347568E-6	58.329697	38
ATAACTA	25	2.3849978E-4	55.99651	5
AATCTCG	3900	0.0	52.85568	36
TCTCGTA	3985	0.0	52.782154	38
CTCGTAT	4130	0.0	52.708576	39
ATCTCGT	3985	0.0	52.694332	37
TCGCCAG	20	0.006932718	52.51436	61
CTTCGAC	20	0.006941933	52.496727	26
CGCGGAC	20	0.006941933	52.496727	23
TGTGACG	20	0.006941933	52.496727	12
GCGGGCT	20	0.006941933	52.496727	47
CTTTCGC	20	0.006941933	52.496727	28
TTATTCG	20	0.006941933	52.496727	19
TCGTATG	4190	0.0	52.371433	40
GTCAATC	3890	0.0	52.271805	33
CGTATGC	4190	0.0	52.20438	41
CAATCTC	3930	0.0	52.18504	35
CTGCTTG	4155	0.0	52.138744	54
TATGCCG	4185	0.0	52.0995	43