##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779874_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 148966 Sequences flagged as poor quality 0 Sequence length 76 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.56206785440973 34.0 34.0 34.0 34.0 34.0 2 33.68680101499671 34.0 34.0 34.0 34.0 34.0 3 33.77988937072889 34.0 34.0 34.0 34.0 34.0 4 33.58949021924466 34.0 34.0 34.0 34.0 34.0 5 33.63656807593679 34.0 34.0 34.0 34.0 34.0 6 37.33600284628707 38.0 38.0 38.0 37.0 38.0 7 37.38525569593062 38.0 38.0 38.0 37.0 38.0 8 37.26011304592994 38.0 38.0 38.0 36.0 38.0 9 37.20228777036371 38.0 38.0 38.0 36.0 38.0 10-11 37.15375656190003 38.0 38.0 38.0 36.5 38.0 12-13 37.307331874387444 38.0 38.0 38.0 36.5 38.0 14-15 37.323530201522495 38.0 38.0 38.0 37.0 38.0 16-17 37.202418672717265 38.0 38.0 38.0 36.0 38.0 18-19 37.06965012150424 38.0 38.0 38.0 35.5 38.0 20-21 37.11137105111233 38.0 38.0 38.0 36.0 38.0 22-23 37.12124578762939 38.0 38.0 38.0 36.0 38.0 24-25 37.27085039539224 38.0 38.0 38.0 36.0 38.0 26-27 37.14474443832821 38.0 38.0 38.0 36.0 38.0 28-29 36.71178993864372 38.0 37.0 38.0 34.0 38.0 30-31 37.027153847186604 38.0 38.0 38.0 36.0 38.0 32-33 36.971688170455 38.0 38.0 38.0 36.0 38.0 34-35 36.942483519729336 38.0 38.0 38.0 35.5 38.0 36-37 36.86470738289274 38.0 37.5 38.0 35.5 38.0 38-39 36.01780607655438 38.0 37.0 38.0 33.0 38.0 40-41 36.6377394841776 38.0 37.0 38.0 34.5 38.0 42-43 37.12859310178162 38.0 38.0 38.0 36.0 38.0 44-45 36.91870628197039 38.0 37.5 38.0 35.0 38.0 46-47 37.05784205791926 38.0 38.0 38.0 36.0 38.0 48-49 36.704372138608804 38.0 37.0 38.0 34.5 38.0 50-51 36.82433575446746 38.0 37.0 38.0 34.5 38.0 52-53 36.72692090812669 38.0 37.0 38.0 34.5 38.0 54-55 36.74696910704456 38.0 37.0 38.0 35.0 38.0 56-57 36.629358377079335 38.0 37.0 38.0 34.0 38.0 58-59 36.664735577245814 38.0 37.0 38.0 34.5 38.0 60-61 36.32457406388035 38.0 37.0 38.0 34.0 38.0 62-63 36.18225971026946 38.0 37.0 38.0 34.0 38.0 64-65 36.59855604634615 38.0 37.0 38.0 34.0 38.0 66-67 36.299964421411595 38.0 37.0 38.0 33.5 38.0 68-69 36.29869231905267 38.0 37.0 38.0 34.0 38.0 70-71 34.787394438999506 38.0 35.5 38.0 26.5 38.0 72-73 32.16379912194729 38.0 28.0 38.0 11.0 38.0 74-75 31.743971778795164 38.0 25.0 38.0 11.0 38.0 76 31.598599680463998 37.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 1.0 22 7.0 23 13.0 24 30.0 25 85.0 26 180.0 27 297.0 28 571.0 29 905.0 30 1502.0 31 2439.0 32 3693.0 33 6186.0 34 10521.0 35 22252.0 36 26467.0 37 73817.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.588505500114163 16.64137106631029 12.681154553879628 42.08896887969591 2 12.990883825839452 15.87409207470161 50.29067035430904 20.8443537451499 3 13.893103124202838 18.60357396989917 46.678436690251466 20.824886215646522 4 10.313762872064766 33.78287662956648 33.012230978881085 22.89112951948767 5 10.387605225353436 30.251869554126444 48.36539881583717 10.995126404682948 6 22.069465515621015 49.86305599935556 16.508465018863365 11.559013466160064 7 18.909012794865944 26.926949773773885 19.210423855107877 34.9536135762523 8 17.254944081199735 50.01812494126177 16.372192312339727 16.35473866519877 9 17.883946672395044 15.541130190781788 17.079736315669347 49.49518682115382 10-11 18.625726675885772 32.2197682692695 30.51266732005961 18.64183773478512 12-13 18.391445027724448 18.445484204449336 33.1683068619685 29.994763905857713 14-15 17.124713021763355 18.56933796973806 20.469435978679698 43.83651302981889 16-17 28.541076487252127 31.28431991192621 19.115435737013815 21.059167863807847 18-19 29.051595666125156 22.985110696400522 20.371427037042007 27.59186660043231 20-21 17.711088436287476 20.222399742223057 19.894472564209284 42.17203925728018 22-23 16.96897278573634 32.196608622101685 19.644751151269418 31.189667440892556 24-25 28.622639926155912 32.014433162708734 19.757992783418647 19.604934127716707 26-27 29.549695903763272 32.97900191990119 20.690627391485307 16.780674784850234 28-29 17.24890243411248 22.7625766953533 31.233637205805355 28.754883664728865 30-31 16.49134701878281 20.15963374192769 45.277445860129156 18.07157337916035 32-33 26.82558436153216 20.152585153659224 24.164238819596417 28.857591665212194 34-35 19.024811030704996 20.132781977095444 32.6165030946659 28.225903897533666 36-37 16.32083831209806 41.83807043217915 22.113435280533814 19.727655975188966 38-39 16.258407958863096 23.562087993233355 32.418806976088504 27.760697071815045 40-41 16.45509713625928 19.917632211377093 33.91142945370084 29.715841198662783 42-43 28.18471391026781 19.49948142355109 32.79014268404429 19.525661982136803 44-45 17.241518198783616 30.81676355678477 34.26956486715089 17.672153377280722 46-47 27.657317777210906 20.029402682491305 24.453902232724246 27.859377307573542 48-49 26.59734436045809 18.890887853604177 22.634695165339743 31.87707262059799 50-51 17.650198563894605 19.288056960814263 34.02576127349449 29.035983201796643 52-53 15.061695233938256 19.42787113670321 45.33113972501553 20.17929390434301 54-55 14.91359450873458 19.431328958768496 36.22750871442867 29.42756781806825 56-57 26.499222556931336 19.253050162708927 24.529252344922774 29.718474935436962 58-59 16.00441871709466 19.714663693993767 43.59050983130977 20.690407757601808 60-61 26.37977692571129 30.703603972629416 24.525077391064944 18.39154171059435 62-63 15.6122520925454 45.35611043402061 20.17640166127792 18.855235812156067 64-65 14.559687939548358 46.168900705291534 20.01973876350746 19.251672591652653 66-67 14.463191471501721 46.50381935700496 19.511458071014857 19.521531100478466 68-69 14.497861741623197 46.215584781776805 19.617597497197103 19.6689559794029 70-71 15.159724460199806 44.263951552261254 19.839335589214738 20.7369883983242 72-73 15.876335729225065 38.69695270771575 21.161173796710656 24.26553776634852 74-75 16.70622278768266 36.1285579527945 21.70405755163836 25.461161707884482 76 16.44175897952333 36.76737160120846 21.46156428331655 25.329305135951664 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.0 12 2.0 13 4.0 14 15.0 15 20.5 16 29.0 17 41.0 18 75.5 19 140.0 20 205.0 21 240.0 22 278.5 23 441.5 24 660.5 25 755.0 26 913.0 27 1235.5 28 1540.5 29 1681.0 30 1845.5 31 2352.5 32 2776.0 33 2857.0 34 3136.5 35 3803.5 36 4448.5 37 4706.0 38 4832.5 39 8910.0 40 15394.5 41 16446.0 42 14964.0 43 13020.5 44 9405.0 45 6921.5 46 6110.0 47 5626.0 48 5117.0 49 4760.5 50 4429.0 51 4220.0 52 3829.5 53 3480.0 54 3312.0 55 3179.5 56 2895.0 57 2513.5 58 2284.0 59 2237.5 60 1911.0 61 1560.5 62 1490.0 63 1394.5 64 1224.5 65 1026.0 66 821.5 67 741.0 68 700.5 69 601.0 70 526.0 71 510.0 72 481.5 73 402.0 74 307.5 75 264.0 76 269.5 77 239.5 78 210.0 79 216.0 80 182.5 81 134.5 82 90.0 83 60.0 84 56.0 85 46.5 86 31.5 87 22.0 88 19.0 89 9.5 90 3.5 91 4.0 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0402776472483654 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.002349529422821315 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 3.35647060403045E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.014432823597330936 52-53 0.03255776485909537 54-55 0.05034705906045675 56-57 0.05403917672489024 58-59 0.036249882523528856 60-61 0.03155082367788623 62-63 0.029872588375871006 64-65 0.013761529476524845 66-67 0.03591423546312581 68-69 0.008726823570479169 70-71 0.01476847065773398 72-73 0.020474470684585747 74-75 0.014432823597330936 76 0.01074070593289744 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 148966.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.390599197132232 #Duplication Level Percentage of deduplicated Percentage of total 1 41.304645744826644 12.13968288065733 2 19.15399022429309 11.25894499415974 3 14.702389109679778 12.963360766886403 4 10.323877392535746 12.136997704174107 5 6.53008085514595 9.596149456923056 6 3.7892284500479647 6.68206167850382 7 2.044219085468914 4.205657666850153 8 1.0963409620391942 2.5777694238953854 9 0.4750810835503175 1.2566625941490004 >10 0.5139098259558722 2.109877421693541 >50 0.022840436709149876 0.424929178470255 >100 0.031976611392809835 1.7104574198139173 >500 0.004568087341829976 1.0398345931286335 >1k 0.004568087341829976 3.5746411932924294 >5k 0.0 0.0 >10k+ 0.002284043670914988 18.322973027402227 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT 27295 18.322973027402227 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 3514 2.3589275405126 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 1811 1.215713652779829 No Hit ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT 802 0.5383778848864842 RNA PCR Primer, Index 48 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 747 0.5014567082421493 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCGT 317 0.21280023629553052 No Hit CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 316 0.21212894217472444 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT 259 0.1738651772887773 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAACTCGTATGCCGT 252 0.16916611844313467 No Hit CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 222 0.14902729481895197 RNA PCR Primer, Index 48 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACTTTCGTCATCTCGTATGCCGTC 187 0.12553200059073882 No Hit CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 163 0.10942094169139266 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00604164708725481 0.0 2 0.0 0.0 0.0 0.00604164708725481 0.0 3 0.0 0.0 0.0 0.00604164708725481 0.0 4 0.0 0.0 0.0 0.014768470657733979 0.0 5 0.0 0.0 0.0 0.014768470657733979 0.0 6 0.0 0.0 0.0 0.01543976477854007 0.0 7 0.0 0.0 0.0 0.01879623538257052 0.0 8 0.0 0.0 0.0 0.01879623538257052 0.0 9 0.0 0.0 0.0 0.02618047071143751 0.0 10 0.0 0.0 0.0 0.029536941315467958 0.0 11 0.0 0.0 0.0 0.029536941315467958 0.0 12 0.0 0.0 0.0 0.03222211779869232 0.0 13 0.0 0.0 0.0 0.034236000161110586 0.0 14 0.0 0.0 0.0 0.034907294281916676 0.0 15 0.0 0.0 0.0 0.036921176644334947 0.0 16 0.0 0.0 0.0 0.03759247076514104 0.0 17 0.0 0.0 0.0 0.03759247076514104 0.0 18 0.0 0.0 0.0 0.0402776472483654 0.0 19 0.0 0.0 0.0 0.04631929433562021 0.0 20 0.0 0.0 0.0 0.05101835318126284 0.0 21 0.0 0.0 0.0 0.0537035296644872 0.0 22 0.0 0.0 0.0 0.058402588510129826 0.0 23 0.0 0.0 0.0 0.06175905911416028 0.0 24 0.0 0.0 0.0 0.06444423559738464 0.0 25 0.0 0.0 0.0 0.06444423559738464 0.0 26 0.0 0.0 0.0 0.06712941208060899 0.0 27 0.0 0.0 0.0 0.07384235328866989 0.0 28 0.0 0.0 0.0 0.08928211806720997 0.0 29 0.0 0.0 0.0 0.10874964757058658 0.0 30 0.0 0.0 0.0 0.12620329471154493 0.0 31 0.0 0.0 0.0 0.15574023602701287 0.0 32 0.0 0.0 0.0 0.19333270679215392 0.0 33 0.0 0.0 0.0 0.23696682464454977 0.0 34 0.0 0.0 0.0 0.30543882496677094 0.0 35 0.0 0.0 0.0 0.42694306083267325 0.0 36 0.0 0.0 0.0 0.6055072969670932 0.0 37 0.0 0.0 0.0 0.8619416511150195 0.0 38 0.0 0.0 0.0 1.2069868292093497 0.0 39 0.0 0.0 0.0 1.5493468308204557 0.0 40 0.0 0.0 0.0 1.9957574211565055 0.0 41 0.0 0.0 0.0 2.589181423949089 0.0 42 0.0 0.0 0.0 3.2389941328893843 0.0 43 0.0 0.0 0.0 3.804895076728918 0.0 44 0.0 0.0 0.0 4.5245223742330465 0.0 45 0.0 0.0 0.0 5.208571083334452 0.0 46 0.0 0.0 0.0 5.769772968328343 0.0 47 0.0 0.0 0.0 6.294053676677899 0.0 48 0.0 0.0 0.0 6.938496032651746 0.0 49 0.0 0.0 0.0 7.449350858585181 0.0 50 0.0 0.0 0.0 7.976988037538767 0.0 51 0.0 0.0 0.0 8.581824040385055 0.0 52 0.0 0.0 0.0 9.161822160761517 0.0 53 0.0 0.0 0.0 9.773371104815864 0.0 54 0.0 0.0 0.0 10.331216519205725 0.0 55 0.0 0.0 0.0 10.842071345139159 0.0 56 0.0 0.0 0.0 11.287810641354403 0.0 57 0.0 0.0 0.0 11.802021937891867 0.0 58 0.0 0.0 0.0 12.288710175476282 0.0 59 0.0 0.0 0.0 12.67201911845656 0.0 60 0.0 0.0 0.0 13.098962179289234 0.0 61 0.0 0.0 0.0 13.53731724017561 0.0 62 0.0 0.0 0.0 13.993797242323751 0.0 63 0.0 0.0 0.0 14.467059597492046 0.0 64 0.0 0.0 0.0 14.863123128767638 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGGCTA 20 7.908458E-5 69.995636 26 GCTCGTA 30 8.347568E-6 58.329697 38 ATAACTA 25 2.3849978E-4 55.99651 5 AATCTCG 3900 0.0 52.85568 36 TCTCGTA 3985 0.0 52.782154 38 CTCGTAT 4130 0.0 52.708576 39 ATCTCGT 3985 0.0 52.694332 37 TCGCCAG 20 0.006932718 52.51436 61 CTTCGAC 20 0.006941933 52.496727 26 CGCGGAC 20 0.006941933 52.496727 23 TGTGACG 20 0.006941933 52.496727 12 GCGGGCT 20 0.006941933 52.496727 47 CTTTCGC 20 0.006941933 52.496727 28 TTATTCG 20 0.006941933 52.496727 19 TCGTATG 4190 0.0 52.371433 40 GTCAATC 3890 0.0 52.271805 33 CGTATGC 4190 0.0 52.20438 41 CAATCTC 3930 0.0 52.18504 35 CTGCTTG 4155 0.0 52.138744 54 TATGCCG 4185 0.0 52.0995 43 >>END_MODULE