##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779873_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 55293 Sequences flagged as poor quality 0 Sequence length 76 %GC 51 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 20.162769247463512 21.0 12.0 23.0 12.0 32.0 2 19.737869169695983 21.0 12.0 23.0 12.0 34.0 3 19.602155788255295 21.0 11.0 27.0 11.0 34.0 4 20.683178702548243 21.0 12.0 27.0 12.0 34.0 5 18.680465881757183 11.0 11.0 23.0 11.0 34.0 6 21.473224458792252 21.0 12.0 28.0 11.0 36.0 7 21.523538241730417 21.0 12.0 31.0 11.0 37.0 8 21.80995786085038 21.0 11.0 31.0 11.0 37.0 9 22.564067784348833 23.0 11.0 34.0 11.0 37.0 10-11 21.328251315718084 21.0 11.5 29.5 11.0 36.5 12-13 21.195259797804425 21.0 11.0 29.5 11.0 36.5 14-15 20.651357314669127 21.0 11.0 28.0 11.0 35.5 16-17 20.613694319353264 21.0 11.0 28.0 11.0 35.0 18-19 20.25299766697412 21.0 11.0 28.0 10.0 36.0 20-21 20.572947751071563 21.0 11.0 27.5 10.0 35.0 22-23 20.631544680158427 21.0 11.0 29.5 10.0 36.5 24-25 20.82118893892536 21.0 11.0 31.0 10.0 36.5 26-27 20.253241820845314 21.0 11.0 27.0 10.0 36.0 28-29 20.00468413723256 21.0 11.0 27.0 10.0 36.0 30-31 19.92676288137739 21.0 11.0 27.0 10.5 36.0 32-33 20.126345106975563 21.0 11.0 27.0 11.0 36.0 34-35 20.336597761018574 21.0 11.0 27.0 11.0 36.0 36-37 20.18039353986942 21.0 11.0 27.0 11.0 36.0 38-39 20.034877832637044 21.0 11.0 27.0 11.0 36.0 40-41 19.977139963467348 21.0 11.0 27.0 11.0 36.0 42-43 20.172770513446547 21.0 11.0 27.0 11.0 36.0 44-45 20.27444703669542 21.0 11.0 27.0 11.0 36.0 46-47 20.13157180836634 16.0 11.0 27.0 11.0 36.0 48-49 19.784457345414427 16.0 11.0 27.0 11.0 35.5 50-51 19.66370969200441 19.0 11.0 26.5 11.0 34.5 52-53 20.071464742372452 21.0 11.0 27.0 11.0 35.5 54-55 19.957155516973216 21.0 11.0 27.0 11.0 36.0 56-57 19.973025518600906 21.0 11.0 27.0 11.0 36.0 58-59 19.7289439892934 16.0 11.0 26.5 10.0 36.0 60-61 19.990523212703238 21.0 11.0 27.0 11.0 35.5 62-63 19.720000723418877 19.0 11.0 27.0 11.0 36.0 64-65 19.59876476226647 16.0 11.0 26.5 10.5 36.0 66-67 20.042437559908127 21.0 11.0 27.0 10.0 36.0 68-69 19.989926392129203 21.0 11.0 27.0 10.0 35.5 70-71 20.12837972256886 20.0 11.0 27.0 10.5 35.5 72-73 19.450699003490495 15.0 11.0 25.0 10.0 34.0 74-75 19.35263053189373 15.0 11.0 25.0 10.0 34.0 76 19.400014468377552 19.0 11.0 25.0 10.0 34.0 >>END_MODULE >>Per sequence quality scores fail #Quality Count 12 144.0 13 1096.0 14 3025.0 15 4709.0 16 6160.0 17 7056.0 18 7161.0 19 6106.0 20 4720.0 21 3424.0 22 2263.0 23 1471.0 24 1042.0 25 755.0 26 557.0 27 392.0 28 328.0 29 282.0 30 264.0 31 266.0 32 246.0 33 300.0 34 397.0 35 539.0 36 912.0 37 1678.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 16.463205107337274 35.30645832202992 8.138462373175628 40.09187419745718 2 9.299549671748684 26.797243774076286 26.046696688550085 37.85650986562494 3 17.18300689056481 22.624925397428246 33.487059844826646 26.705007867180292 4 11.030329336444035 40.18953574593529 19.998914871683578 28.7812200459371 5 20.9592534317183 29.09771580489393 26.225742860759954 23.717287902627817 6 13.71807856471099 40.929971786153516 10.144324676264198 35.2076249728713 7 13.952647096062364 26.919529003201475 18.935735344656067 40.192088556080094 8 11.370541850538956 41.66425522679592 10.607321131447588 36.35788179121754 9 16.19969250248711 21.3457538211088 11.594465044768022 50.86008863163607 10-11 12.292806438486233 35.928923452547814 18.480806619342587 33.29746348962337 12-13 12.319823485793862 24.964281192917728 23.70281952507551 39.0130757962129 14-15 26.33178098295429 29.37468915314012 15.370981597865896 28.922548266039698 16-17 27.574919067513065 24.509431573616915 14.473803193894344 33.44184616497567 18-19 16.996590734393795 24.846040459030032 20.257548765158575 37.899820041417605 20-21 26.609154865896222 23.576221221492773 15.359991318973467 34.45463259363753 22-23 27.635850643419758 22.799576780821297 14.424720340745697 35.139852235013244 24-25 16.487610779526136 33.24470971242539 13.531379996382709 36.73629951166576 26-27 24.433472591467275 33.18684101061617 14.982004955419312 27.39768144249724 28-29 18.149755832881173 31.725447639717853 18.886778802676794 31.23801772472418 30-31 20.50152827765821 28.101318478595072 19.69126982691577 31.70588341683095 32-33 16.2696905575751 30.905358725335937 20.62828929520916 32.1966614218798 34-35 15.189907759088442 35.62940857297884 18.565744257551096 30.614939410381623 36-37 22.899030460892845 25.475725345488748 20.202952029520297 31.42229216409811 38-39 23.62128529310688 22.30452004992132 23.901640530323583 30.172554126648215 40-41 17.808764219702315 30.950572405186914 20.225887544535475 31.014775830575296 42-43 11.787312926707962 29.891938327983 22.76438938373197 35.556359361577066 44-45 12.031217500610424 25.085233181707196 26.90655549426202 35.97699382342036 46-47 16.23048959143441 28.231538586750105 22.158217431408367 33.379754390407115 48-49 17.910947136165518 29.267719241133598 20.47908415170094 32.342249470999946 50-51 27.180980457763994 27.542706251526035 15.087582857814633 30.188730432895344 52-53 10.752270014108454 33.560937669572766 19.600803096624826 36.08598921969396 54-55 15.220654729607524 27.258093687827817 18.756556339301863 38.7646952432628 56-57 17.975780267882175 30.186034312794497 16.22306029609934 35.61512512322399 58-59 15.49001519426959 30.803668330800953 18.14539468924101 35.56092178568844 60-61 12.115593342981185 28.168415340086835 19.039435600578873 40.676555716353114 62-63 15.460794067106809 29.444695667902685 17.787826716107443 37.306683548883065 64-65 15.72225789821188 27.93882220996174 17.911055235476606 38.427864656349776 66-67 12.553587902248431 37.805473653745274 13.522240109979561 36.11869833402673 68-69 14.065071528041525 41.26290850559745 11.532201182789866 33.13981878357116 70-71 14.194382652415316 41.97728464724287 11.376666124102508 32.451666576239305 72-73 16.693042982844844 36.53677461362465 12.841497933604028 33.92868446992648 74-75 14.939046447692087 34.42338301258863 16.998263637679063 33.639306902040225 76 12.274609805942886 39.33047582876675 13.710596278009874 34.68431808728049 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 0.5 16 0.0 17 0.0 18 1.0 19 5.0 20 7.0 21 6.0 22 8.0 23 13.5 24 19.5 25 22.0 26 39.0 27 64.0 28 79.5 29 87.0 30 109.0 31 155.5 32 218.0 33 256.0 34 322.5 35 470.0 36 634.0 37 717.0 38 833.0 39 1079.0 40 1351.5 41 1718.0 42 1942.0 43 2147.5 44 2503.0 45 2813.5 46 2974.0 47 3131.0 48 3360.0 49 3505.5 50 3579.0 51 3540.0 52 3452.5 53 3362.0 54 3320.0 55 3100.0 56 2826.0 57 2537.5 58 2303.0 59 2152.5 60 1871.0 61 1608.0 62 1476.0 63 1351.0 64 1099.5 65 840.0 66 631.0 67 555.0 68 491.5 69 386.0 70 310.0 71 276.0 72 253.5 73 196.5 74 134.5 75 107.0 76 109.5 77 94.0 78 67.5 79 59.0 80 56.5 81 50.0 82 35.0 83 24.0 84 24.5 85 23.0 86 19.0 87 17.0 88 10.5 89 7.5 90 10.0 91 11.0 92 13.0 93 9.0 94 4.5 95 6.0 96 8.0 97 6.0 98 6.0 99 8.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0018085471940390285 7 0.010851283164234171 8 0.0018085471940390285 9 0.014468377552312228 10-11 9.042735970195143E-4 12-13 0.0 14-15 9.042735970195143E-4 16-17 0.0 18-19 0.004521367985097571 20-21 0.0 22-23 0.004521367985097571 24-25 0.005425641582117086 26-27 0.0 28-29 0.005425641582117086 30-31 0.003617094388078057 32-33 0.0 34-35 0.005425641582117086 36-37 0.016276924746351257 38-39 0.010851283164234171 40-41 0.0 42-43 9.042735970195143E-4 44-45 0.0063299151791366 46-47 0.003617094388078057 48-49 0.0 50-51 0.004521367985097571 52-53 0.0126598303582732 54-55 0.005425641582117086 56-57 0.013564103955292714 58-59 0.016276924746351257 60-61 0.02351111352250737 62-63 0.014468377552312228 64-65 0.020798292731448828 66-67 0.018085471940390285 68-69 0.0 70-71 0.0 72-73 0.0063299151791366 74-75 0.009042735970195143 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 55293.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 97.94549038757167 #Duplication Level Percentage of deduplicated Percentage of total 1 98.95119744446701 96.9182355813575 2 0.5779492955665935 1.1321505434684318 3 0.2492752552763262 0.7324616135858065 4 0.10340306885536496 0.4051145714647424 5 0.0590874679173514 0.28936755104624456 6 0.0295437339586757 0.17362053062774674 7 0.007385933489668925 0.0506393214330928 8 0.0036929667448344626 0.028936755104624456 9 0.0036929667448344626 0.032553849492702513 >10 0.01292538360692062 0.13744958674696614 >50 0.0018464833724172313 0.09947009567214656 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.005425641582117086 0.0 2 0.0 0.0 0.0 0.005425641582117086 0.0 3 0.0 0.0 0.0 0.005425641582117086 0.0 4 0.0 0.0 0.0 0.005425641582117086 0.0 5 0.0 0.0 0.0 0.0126598303582732 0.0 6 0.0 0.0 0.0 0.014468377552312228 0.0 7 0.0 0.0 0.0 0.0253196607165464 0.0 8 0.0 0.0 0.0 0.0253196607165464 0.0 9 0.0 0.0 0.0 0.0253196607165464 0.0 10 0.0 0.0 0.0 0.0253196607165464 0.0 11 0.0 0.0 0.0 0.028936755104624456 0.0 12 0.0 0.0 0.0 0.028936755104624456 0.0 13 0.0 0.0 0.0 0.028936755104624456 0.0 14 0.0 0.0 0.0 0.028936755104624456 0.0 15 0.0 0.0 0.0 0.028936755104624456 0.0 16 0.0 0.0 0.0 0.028936755104624456 0.0 17 0.0 0.0 0.0 0.028936755104624456 0.0 18 0.0 0.0 0.0 0.028936755104624456 0.0 19 0.0 0.0 0.0 0.04521367985097571 0.0 20 0.0 0.0 0.0 0.04702222704501474 0.0 21 0.0 0.0 0.0 0.05244786862713183 0.0 22 0.0 0.0 0.0 0.07776752934367823 0.0 23 0.0 0.0 0.0 0.08500171811983434 0.0 24 0.0 0.0 0.0 0.10851283164234171 0.0 25 0.0 0.0 0.0 0.11212992603041977 0.0 26 0.0 0.0 0.0 0.11212992603041977 0.0 27 0.0 0.0 0.0 0.11755556761253685 0.0 28 0.0 0.0 0.0 0.12298120919465394 0.0 29 0.0 0.0 0.0 0.1392581339410052 0.0 30 0.0 0.0 0.0 0.14830086991120034 0.0 31 0.0 0.0 0.0 0.15372651149331742 0.0 32 0.0 0.0 0.0 0.16819488904562965 0.0 33 0.0 0.0 0.0 0.1772376250158248 0.0 34 0.0 0.0 0.0 0.1971316441502541 0.0 35 0.0 0.0 0.0 0.22425985206083954 0.0 36 0.0 0.0 0.0 0.27489917349393234 0.0 37 0.0 0.0 0.0 0.34181541967337636 0.0 38 0.0 0.0 0.0 0.4322427793753278 0.0 39 0.0 0.0 0.0 0.575118007704411 0.0 40 0.0 0.0 0.0 0.7523556327202359 0.0 41 0.0 0.0 0.0 0.889805219467202 0.0 42 0.0 0.0 0.0 1.0362975421843632 0.0 43 0.0 0.0 0.0 1.2370462807226954 0.0 44 0.0 0.0 0.0 1.3437505651709982 0.0 45 0.0 0.0 0.0 1.4902428878881595 0.0 46 0.0 0.0 0.0 1.6656719657099452 0.0 47 0.0 0.0 0.0 1.7579078726059356 0.0 48 0.0 0.0 0.0 1.8591865154721212 0.0 49 0.0 0.0 0.0 1.9604651583383068 0.0 50 0.0 0.0 0.0 2.0490839708462194 0.0 51 0.0 0.0 0.0 2.157596802488561 0.0 52 0.0 0.0 0.0 2.2715352757130196 0.0 53 0.0 0.0 0.0 2.352919899444776 0.0 54 0.0 0.0 0.0 2.5193062412963667 0.0 55 0.0 0.0 0.0 2.613350695386396 0.0 56 0.0 0.0 0.0 2.7128207910585425 0.0 57 0.0 0.0 0.0 2.8177165283128063 0.0 58 0.0 0.0 0.0 2.8882498688803286 0.0 59 0.0 0.0 0.0 2.9587832094478506 0.0 60 0.0 0.0 0.0 3.0220823612392165 0.0 61 0.0 0.0 0.0 3.116126815329246 0.0 62 0.0 0.0 0.0 3.1703832311504168 0.0 63 0.0 0.0 0.0 3.240916571717939 0.0 64 0.0 0.0 0.0 3.3295353842258515 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGCTC 15 0.0022136807 70.00001 38 GTTTAGA 35 3.6270649E-9 70.00001 36 GACGTTG 15 0.0022136807 70.00001 14 TTCCGAC 30 1.0063377E-7 70.00001 19 TCGATCA 15 0.0022136807 70.00001 39 AAAGTTA 15 0.0022136807 70.00001 45 GTGTCGC 15 0.0022136807 70.00001 36 GTGTAGC 30 1.0063377E-7 70.00001 36 GTATCAC 15 0.0022136807 70.00001 57 TAGTGTA 30 1.0063377E-7 70.00001 34 TAGCTAT 15 0.0022136807 70.00001 39 GCGTAGC 15 0.0022136807 70.00001 36 ATCTCTT 20 7.862112E-5 70.0 42 CGGCGGT 20 7.862112E-5 70.0 46 TGGCCGC 25 2.8053382E-6 70.0 49 TCGGCGG 20 7.862112E-5 70.0 45 GCTCTCG 20 7.862112E-5 70.0 41 CTAGTGT 20 7.862112E-5 70.0 33 TCTCGGC 20 7.862112E-5 70.0 43 TGTAGCT 25 2.8053382E-6 70.0 37 >>END_MODULE