##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779873_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 55293 Sequences flagged as poor quality 0 Sequence length 76 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.60933572061563 34.0 34.0 34.0 34.0 34.0 2 33.698135387842946 34.0 34.0 34.0 34.0 34.0 3 33.80010127864286 34.0 34.0 34.0 34.0 34.0 4 33.57625739243665 34.0 34.0 34.0 34.0 34.0 5 33.64328215144774 34.0 34.0 34.0 34.0 34.0 6 37.39525798925723 38.0 38.0 38.0 37.0 38.0 7 37.40619969978117 38.0 38.0 38.0 37.0 38.0 8 37.31466912629085 38.0 38.0 38.0 37.0 38.0 9 37.25073698298157 38.0 38.0 38.0 37.0 38.0 10-11 37.15487493896153 38.0 38.0 38.0 36.5 38.0 12-13 37.31072649340784 38.0 38.0 38.0 36.5 38.0 14-15 37.34975494185521 38.0 38.0 38.0 37.0 38.0 16-17 37.048206825457115 38.0 38.0 38.0 35.5 38.0 18-19 36.830593384334364 38.0 38.0 38.0 34.0 38.0 20-21 36.9682057403288 38.0 37.5 38.0 35.0 38.0 22-23 37.1440236557973 38.0 38.0 38.0 36.0 38.0 24-25 37.050838261624435 38.0 38.0 38.0 35.5 38.0 26-27 36.8397446331362 38.0 38.0 38.0 34.0 38.0 28-29 36.17280668439043 38.0 37.0 38.0 33.0 38.0 30-31 35.76308031758089 38.0 36.5 38.0 31.0 38.0 32-33 35.941683395728205 38.0 37.0 38.0 31.0 38.0 34-35 36.3438409925307 38.0 37.0 38.0 34.0 38.0 36-37 35.802841227641835 38.0 36.5 38.0 32.5 38.0 38-39 32.69379487457725 36.5 30.5 37.0 18.0 38.0 40-41 35.424601667480516 37.5 35.5 38.0 30.5 38.0 42-43 36.723301322048 38.0 37.0 38.0 34.5 38.0 44-45 36.428562385835455 38.0 37.0 38.0 33.5 38.0 46-47 36.63532454379397 38.0 37.0 38.0 34.0 38.0 48-49 36.124247192230484 38.0 37.0 38.0 33.5 38.0 50-51 35.94656647315212 38.0 36.5 38.0 31.5 38.0 52-53 35.85935832745555 38.0 37.0 38.0 31.5 38.0 54-55 35.97128931329463 38.0 37.0 38.0 32.0 38.0 56-57 35.77939341327112 38.0 37.0 38.0 31.5 38.0 58-59 35.600482882100806 38.0 37.0 38.0 31.5 38.0 60-61 34.96599027001609 38.0 36.0 38.0 27.0 38.0 62-63 35.16543685457472 38.0 36.0 38.0 29.0 38.0 64-65 35.965031740003255 38.0 37.0 38.0 34.0 38.0 66-67 35.43040710397338 38.0 36.5 38.0 30.0 38.0 68-69 35.02768885754074 38.0 36.0 38.0 28.0 38.0 70-71 30.19752952453294 33.5 26.5 37.5 16.5 38.0 72-73 21.311033946430832 22.0 11.0 28.0 10.0 37.0 74-75 19.98517895574485 19.0 11.0 25.0 10.0 35.5 76 20.120666268786284 19.0 11.0 25.0 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 1.0 22 4.0 23 10.0 24 32.0 25 69.0 26 148.0 27 346.0 28 581.0 29 923.0 30 1346.0 31 1950.0 32 2984.0 33 4794.0 34 7915.0 35 17708.0 36 13290.0 37 3192.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 3.9810357931309035 3.6969346024392893 12.979986247330896 79.34204335709892 2 1.7343967590834282 2.445155806340767 81.4461143363536 14.374333098222197 3 2.229938690250122 4.89573725426365 85.51534552294142 7.358978532544806 4 1.4323693776789106 71.63655435588592 21.619373157542547 5.311703108892626 5 1.5680104172318374 17.07449405892247 79.29394317544717 2.0635523483985314 6 2.931655001537265 79.79852784258405 12.088329444956866 5.181487710921816 7 2.7363319045810504 16.75799829996564 8.832944495686615 71.6727252997667 8 2.2245130486680047 79.82927314488272 4.018591865154721 13.927621941294557 9 2.228130143056083 13.748575769084695 2.3547284466388154 81.6685656412204 10-11 2.342068616280542 45.69656195178413 38.93802108766028 13.023348344275043 12-13 3.269853326822563 5.6752210948944715 46.65147487023674 44.40345070804623 14-15 4.041198705080209 3.33224820501691 10.784366918054726 81.84218617184816 16-17 42.878845423471326 38.07805689689472 2.431591702385474 16.611505977248477 18-19 45.69746622538115 11.924655923896333 2.2769609172951366 40.10091693342738 20-21 6.83359557267647 3.6550738791528765 2.2887164740563906 87.22261407411426 22-23 4.142477347946395 43.38976000578735 2.2290344166531026 50.23872822961315 24-25 42.99730526468088 42.69527788327637 2.2398856998173367 12.067531152225417 26-27 46.823286853670446 47.33781853037455 2.212757491906751 3.6261371240482525 28-29 42.19973595210967 12.197746550196227 2.4840395710126058 43.1184779266815 30-31 46.16045430705514 43.084115529994754 2.734523357387011 8.020906805563092 32-33 11.977103792523467 41.64541623713671 3.344003761778164 43.03347620856166 34-35 37.92523465899843 12.24838587162932 4.3396089920966485 45.486770477275606 36-37 10.982402835802 38.356573164776734 43.36534461866782 7.295679380753441 38-39 3.4932089052863837 11.899336263179789 44.946919139854955 39.660535691678874 40-41 3.068200314687212 3.5465610475105347 46.71206120123705 46.673177436565204 42-43 42.791517836958 3.155943391960935 42.809603472442014 11.242935298639056 44-45 6.657262221257663 41.70600256813701 46.95259797804424 4.684137232561084 46-47 42.752247119888594 5.774691190566618 12.346951693704447 39.12610999584034 48-49 41.042265747924695 2.5120720525202107 4.827012460890167 51.618649738664935 50-51 10.508845555515357 2.457400238775732 44.36344560616475 42.67030859954416 52-53 2.956899280900909 2.4847361042015286 82.39247433404188 12.165890280855683 54-55 2.818060920777658 2.6099857966110895 51.15300759021866 43.41894569239259 56-57 42.41461980368209 2.5331343013525127 13.317048898538925 41.735196996426474 58-59 6.3036497670842575 4.304644746958528 77.93496449730904 11.456740988648184 60-61 41.573277616476275 40.47069890284825 14.471910925388254 3.484112555287222 62-63 5.3611809613401595 88.10445574108581 2.634006910649999 3.900356386924037 64-65 1.842271863977571 92.52419281902867 2.3957673871755447 3.2377679298182147 66-67 1.8579155887620529 92.18571919604899 2.1980208766756517 3.758344338513306 68-69 1.9886954555731404 91.79832692742482 2.208455799231291 4.004521817770744 70-71 2.781093987410462 85.30135301353013 3.2966138484914262 8.620939150567976 72-73 5.834840810419681 67.97756874095514 6.362156295224312 19.825434153400867 74-75 7.513860123542765 60.41838128227622 8.319691776175961 23.748066818005046 76 7.346850187198177 61.67772974732768 7.478883683915425 23.49653638155872 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 1.0 17 2.0 18 2.5 19 3.0 20 1.5 21 0.0 22 10.5 23 14.0 24 16.0 25 25.0 26 29.5 27 40.5 28 51.0 29 55.0 30 48.0 31 52.5 32 74.0 33 84.0 34 86.0 35 109.5 36 121.5 37 112.0 38 151.0 39 221.0 40 485.5 41 5670.5 42 10622.0 43 13107.0 44 13849.5 45 9595.5 46 7084.0 47 5201.5 48 2387.0 49 1120.0 50 785.0 51 605.0 52 338.5 53 236.0 54 220.0 55 200.0 56 173.5 57 174.0 58 181.0 59 169.5 60 174.5 61 142.0 62 93.0 63 102.5 64 98.5 65 74.5 66 62.0 67 60.0 68 57.5 69 49.0 70 31.0 71 19.0 72 28.0 73 31.5 74 23.0 75 20.0 76 14.0 77 11.0 78 10.5 79 7.0 80 6.5 81 9.5 82 9.5 83 6.0 84 4.5 85 3.5 86 2.0 87 0.0 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.05606496301520988 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 9.042735970195143E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.019894019134429314 52-53 0.02803248150760494 54-55 0.0443094062539562 56-57 0.04611795344799523 58-59 0.02803248150760494 60-61 0.024415387119526885 62-63 0.028936755104624456 64-65 0.014468377552312228 66-67 0.028936755104624456 68-69 0.009947009567214657 70-71 0.016276924746351257 72-73 0.02351111352250737 74-75 0.015372651149331742 76 0.007234188776156114 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 55293.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 9.330294974047348 #Duplication Level Percentage of deduplicated Percentage of total 1 76.08063578212831 7.098547736603186 2 9.052141887962783 1.6891830792324525 3 4.865283969761582 1.3618360371113885 4 2.8881566194999033 1.077894127647261 5 1.9965109517348323 0.9314018049300996 6 1.415002907540221 0.7921436709890946 7 0.7365768559798411 0.4810735536143816 8 0.3489048265167668 0.2604307959416201 9 0.21321961620469082 0.17904617220986382 >10 1.6669897266912193 2.9208037183730307 >50 0.3295212250436131 2.043658329264102 >100 0.27137042062415195 4.496048324381024 >500 0.07753440589261484 5.192338994086051 >1k 0.03876720294630742 10.885645560920912 >5k 0.0 0.0 >10k+ 0.01938360147315371 60.589948094695536 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT 33502 60.589948094695536 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 4007 7.246848606514387 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 2012 3.638796954406525 No Hit TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 932 1.6855659848443745 No Hit ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT 857 1.5499249452914472 TruSeq Adapter, Index 2 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACGAGCACGTAACTCGTATGCCGT 576 1.0417231837664804 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCGT 506 0.9151248801837484 No Hit CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 405 0.7324616135858065 No Hit CTTTACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 243 0.4394769681514839 No Hit CTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 242 0.43766842095744485 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCACGTAGCTCGTATGCCGT 208 0.37617781636011793 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATATCGTATGCCGT 202 0.3653265331958837 No Hit CCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 181 0.32734704212106414 No Hit TCTTAATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 144 0.2604307959416201 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCG 140 0.253196607165464 No Hit TTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 132 0.23872822961315174 No Hit CTTAATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 128 0.23149404083699565 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCAGT 121 0.21883421047872242 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCACGGATCTCGTATGCCGT 117 0.21160002170256634 No Hit TATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCT 116 0.2097914745085273 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTCTGCCGT 107 0.19351454976217605 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGAACGTATCTCGTATGCCGT 85 0.15372651149331742 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCACGAATCTCGTATGCCGT 84 0.1519179642992784 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTAACTCGTATGCCG 78 0.14106668113504423 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCCCGTATCTCGTATGCCGT 74 0.1338324923588881 No Hit CTTATACACCTCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT 74 0.1338324923588881 No Hit CTTATACACATCTCCGAGCCCACGAGAAGAGCACGTATCTCGTATGCCGT 73 0.13202394516484908 No Hit TCTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT 69 0.12478975638869295 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTAACTCGTATGCC 69 0.12478975638869295 No Hit TCCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 67 0.12117266200061491 No Hit CAGCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGC 67 0.12117266200061491 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCACGCATCTCGTATGCCGT 65 0.11755556761253685 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGC 59 0.10670428444830267 No Hit CTTATACACATCTCCGAGCACACGAGACGAGCACGTATCTCGTATGCCGT 58 0.10489573725426365 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.005425641582117086 0.0 2 0.0 0.0 0.0 0.005425641582117086 0.0 3 0.0 0.0 0.0 0.005425641582117086 0.0 4 0.0 0.0 0.0 0.005425641582117086 0.0 5 0.0 0.0 0.0 0.014468377552312228 0.0 6 0.0 0.0 0.0 0.016276924746351257 0.0 7 0.0 0.0 0.0 0.027128207910585428 0.0 8 0.0 0.0 0.0 0.027128207910585428 0.0 9 0.0 0.0 0.0 0.028936755104624456 0.0 10 0.0 0.0 0.0 0.028936755104624456 0.0 11 0.0 0.0 0.0 0.032553849492702513 0.0 12 0.0 0.0 0.0 0.032553849492702513 0.0 13 0.0 0.0 0.0 0.032553849492702513 0.0 14 0.0 0.0 0.0 0.032553849492702513 0.0 15 0.0 0.0 0.0 0.032553849492702513 0.0 16 0.0 0.0 0.0 0.032553849492702513 0.0 17 0.0 0.0 0.0 0.032553849492702513 0.0 18 0.0 0.0 0.0 0.032553849492702513 0.0 19 0.0 0.0 0.0 0.03978803826885863 0.0 20 0.0 0.0 0.0 0.03978803826885863 0.0 21 0.0 0.0 0.0 0.04521367985097571 0.0 22 0.0 0.0 0.0 0.04521367985097571 0.0 23 0.0 0.0 0.0 0.054256415821170856 0.0 24 0.0 0.0 0.0 0.054256415821170856 0.0 25 0.0 0.0 0.0 0.05787351020924891 0.0 26 0.0 0.0 0.0 0.05787351020924891 0.0 27 0.0 0.0 0.0 0.06149060459732697 0.0 28 0.0 0.0 0.0 0.06510769898540503 0.0 29 0.0 0.0 0.0 0.08138462373175628 0.0 30 0.0 0.0 0.0 0.0886188125079124 0.0 31 0.0 0.0 0.0 0.09585300128406851 0.0 32 0.0 0.0 0.0 0.11212992603041977 0.0 33 0.0 0.0 0.0 0.126598303582732 0.0 34 0.0 0.0 0.0 0.14830086991120034 0.0 35 0.0 0.0 0.0 0.17000343623966868 0.0 36 0.0 0.0 0.0 0.23330258803103468 0.0 37 0.0 0.0 0.0 0.3454325140614544 0.0 38 0.0 0.0 0.0 0.4322427793753278 0.0 39 0.0 0.0 0.0 0.573309460510372 0.0 40 0.0 0.0 0.0 0.7342701607798455 0.0 41 0.0 0.0 0.0 0.8536342755864215 0.0 42 0.0 0.0 0.0 0.9947009567214656 0.0 43 0.0 0.0 0.0 1.200875336841915 0.0 44 0.0 0.0 0.0 1.2967283381259833 0.0 45 0.0 0.0 0.0 1.4215180945146764 0.0 46 0.0 0.0 0.0 1.596947172336462 0.0 47 0.0 0.0 0.0 1.6819488904562965 0.0 48 0.0 0.0 0.0 1.7741847973522868 0.0 49 0.0 0.0 0.0 1.8754634402184724 0.0 50 0.0 0.0 0.0 1.9622737055323458 0.0 51 0.0 0.0 0.0 2.0490839708462194 0.0 52 0.0 0.0 0.0 2.153979708100483 0.0 53 0.0 0.0 0.0 2.220895954279927 0.0 54 0.0 0.0 0.0 2.3800481073553614 0.0 55 0.0 0.0 0.0 2.454198542310962 0.0 56 0.0 0.0 0.0 2.544625902012913 0.0 57 0.0 0.0 0.0 2.6368618089089035 0.0 58 0.0 0.0 0.0 2.7019695078943085 0.0 59 0.0 0.0 0.0 2.776119942849909 0.0 60 0.0 0.0 0.0 2.8358020002531967 0.0 61 0.0 0.0 0.0 2.931655001537265 0.0 62 0.0 0.0 0.0 2.97867722858228 0.0 63 0.0 0.0 0.0 3.041976380373646 0.0 64 0.0 0.0 0.0 3.1233610041054023 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTTACA 30 1.0014628E-7 70.04892 1 GAAAAAC 30 1.0014628E-7 70.04892 60 GCCGTCC 15 0.0022075465 70.04892 46 CGTCCTC 15 0.0022075465 70.04892 48 GCTTATA 15 0.0022075465 70.04892 1 TCTTTAT 90 0.0 70.04891 1 ACGTCTT 25 2.7936894E-6 70.048904 47 GACGTCT 25 2.7936894E-6 70.048904 46 TCTTAAT 25 2.7936894E-6 70.048904 1 AGCCCGT 15 0.002215498 69.98552 30 ACACGAG 15 0.002215498 69.98552 20 AACAAGC 15 0.002215498 69.98552 69 CACACGA 15 0.002215498 69.98552 19 AGAAGAG 15 0.002215498 69.98552 25 ACGCATC 15 0.002215498 69.98552 33 CACGCAT 15 0.002215498 69.98552 32 CATCTCG 15 0.002215498 69.98552 36 GGATCTC 20 7.870171E-5 69.98552 35 GAGCCCG 15 0.002215498 69.98552 29 GTCTGCC 30 1.0077747E-7 69.98552 42 >>END_MODULE