FastQCFastQC Report
Wed 25 May 2016
SRR1779872_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779872_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174917
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATATTCG150.002218501970.0257531
AAGTACG150.002223543169.985724
TACGCTT150.002226066869.9656914
TGCGATG150.002226066869.965692
ACGTTGC252.3912007E-455.97255715
CAACCGT200.006947841552.489286
GACGGGT200.006947841552.4892823
TTCAACG200.006955704752.4742743
GCCGACT407.472827E-752.47427420
ACGTGTA352.075627E-550.01839434
CGATTTC305.8550294E-446.68383442
CGTGTAG404.5688204E-543.76609835
TCTTACG404.5842848E-543.74106611
TGGTCGC659.909854E-943.0927749
CCGTACC350.001250585840.01471755
TTGTGCA350.001255875839.9803962
GATACAC459.196453E-538.869833
CGACGAG459.196453E-538.8698322
CGACGAT654.857302E-737.67383622
GTGTAGA1800.036.95803536
Produced by FastQC (version 0.11.5)