##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779872_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 174917 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.886717700395046 34.0 23.0 34.0 12.0 34.0 2 29.73570893623833 34.0 31.0 34.0 12.0 34.0 3 29.30251490707021 34.0 27.0 34.0 11.0 34.0 4 29.53974742306351 34.0 27.0 34.0 12.0 34.0 5 29.83608797315298 34.0 31.0 34.0 11.0 34.0 6 32.517736983826616 37.0 31.0 38.0 12.0 38.0 7 32.62738899020678 37.0 32.0 38.0 12.0 38.0 8 32.03520526878462 37.0 31.0 38.0 11.0 38.0 9 33.02624101716814 37.0 34.0 38.0 12.0 38.0 10-11 31.589376675794803 37.0 28.5 38.0 11.5 38.0 12-13 32.4514026652641 37.0 31.0 38.0 11.0 38.0 14-15 31.227742300634013 37.0 27.0 38.0 11.0 38.0 16-17 31.84448624204623 37.0 28.5 38.0 11.0 38.0 18-19 32.700529393941125 37.5 32.0 38.0 11.0 38.0 20-21 31.44885574300954 37.0 27.5 38.0 11.0 38.0 22-23 32.31960587021273 37.0 31.0 38.0 11.0 38.0 24-25 32.62204645631928 37.5 32.0 38.0 11.0 38.0 26-27 31.54401801997519 37.0 26.5 38.0 11.0 38.0 28-29 32.74082279023766 37.5 32.5 38.0 11.0 38.0 30-31 33.11653527101426 38.0 34.0 38.0 11.0 38.0 32-33 33.25571270945649 38.0 34.0 38.0 11.0 38.0 34-35 33.19651606190365 38.0 34.0 38.0 11.0 38.0 36-37 32.68265520218161 38.0 32.5 38.0 11.0 38.0 38-39 32.6042265760332 37.5 32.5 38.0 11.0 38.0 40-41 32.60796835070347 37.5 32.5 38.0 11.0 38.0 42-43 33.01038206692317 38.0 33.5 38.0 11.0 38.0 44-45 33.05104135104078 38.0 34.0 38.0 11.0 38.0 46-47 32.94037457765683 38.0 34.0 38.0 11.0 38.0 48-49 32.65798350074607 37.5 32.5 38.0 11.0 38.0 50-51 32.04504136247478 37.5 29.5 38.0 11.0 38.0 52-53 32.603288988491684 37.0 32.0 38.0 11.0 38.0 54-55 32.75358026949925 37.5 33.0 38.0 11.0 38.0 56-57 32.808431999176754 38.0 33.5 38.0 11.0 38.0 58-59 33.00230966687057 38.0 34.0 38.0 11.0 38.0 60-61 32.90861951668506 38.0 34.0 38.0 11.0 38.0 62-63 32.882418518497346 38.0 34.0 38.0 11.0 38.0 64-65 32.89587347141787 38.0 33.5 38.0 11.0 38.0 66-67 32.745459274970415 38.0 33.0 38.0 11.0 38.0 68-69 32.10118513352047 37.0 31.0 38.0 11.0 38.0 70-71 32.14729271597386 37.0 31.0 38.0 11.0 38.0 72-73 32.345218017688396 37.0 31.0 38.0 11.0 38.0 74-75 32.41173528016145 37.0 31.5 38.0 11.0 38.0 76 31.50577130867783 37.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 45.0 13 334.0 14 1466.0 15 2720.0 16 3654.0 17 4237.0 18 4353.0 19 3942.0 20 3172.0 21 2490.0 22 2001.0 23 1763.0 24 1747.0 25 1781.0 26 1905.0 27 2210.0 28 2612.0 29 3154.0 30 3751.0 31 4595.0 32 6016.0 33 7603.0 34 10513.0 35 15988.0 36 28037.0 37 54826.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.222128209379306 18.796343408588072 9.756055729288748 33.22547265274387 2 20.08552627817765 21.301531583551057 32.32447389333227 26.28846824493903 3 18.11544904154542 23.320203296420587 31.00270413967768 27.561643522356317 4 13.596162751476415 21.556509658866776 29.695798578754495 35.151529010902316 5 13.503547396765322 31.741340178484652 32.957345483858056 21.797766940891965 6 26.775484534903665 39.123549253902006 16.53536104282202 17.565605168372304 7 26.01715265866209 29.474556889651225 20.435105774728417 24.073184676958263 8 22.865783937065494 36.24908525429931 19.404043175997074 21.481087632638125 9 22.97757016826662 18.42871109942196 19.54362753786428 39.05009119444715 10-11 23.02263157443378 26.250568147709828 24.532546645284302 26.194253632572085 12-13 23.32363349474322 22.759365870670088 26.048640212214934 27.86836042237175 14-15 24.412003475954172 24.99628393057239 22.773788561366597 27.817924032106838 16-17 25.230754278494473 26.276687886436594 22.83931384011137 25.653243994957563 18-19 22.167210274910452 25.831063137643895 25.490891107788794 26.51083547965685 20-21 24.035685496549792 25.199094427642827 24.954406947295002 25.81081312851238 22-23 25.285503157329035 25.213466315629994 23.75700715508789 25.744023371953084 24-25 22.367789148705047 27.999256760619744 23.351152021039393 26.281802069635813 26-27 23.59974844924678 27.82265671897779 24.393848440671185 24.18374639110425 28-29 22.25049169830307 27.206353199469426 25.538581164524537 25.00457393770297 30-31 22.866469809708114 26.524235988234317 25.504314940642768 25.104979261414794 32-33 21.302960832852154 27.36497881852536 26.029202421720015 25.302857926902472 34-35 21.68723950442235 28.261304579004843 25.21711538131693 24.834340535255876 36-37 23.69329212329844 26.124722304025983 25.243243088694022 24.938742483981553 38-39 23.785074114838693 25.16016523964036 26.39717548850041 24.657585157020538 40-41 21.76603760640761 26.924484183927234 25.95316635890165 25.356311850763507 42-43 20.38692858286263 26.227160465594913 26.6393583205653 26.746552630977156 44-45 20.681848067830334 24.557050318169086 28.11322588575643 26.647875728244152 46-47 20.881310388199644 25.631467611914697 27.262878051569377 26.224343948316275 48-49 20.82702081558682 25.7905177884368 27.487036708839053 25.895424687137332 50-51 22.85628528549989 25.92124633745444 25.87922532694919 25.343243050096476 52-53 18.750732618012254 27.060121850457296 26.896301315424576 27.292844216105877 54-55 19.71675162021618 25.95461965300072 26.807680982507097 27.520947744275997 56-57 20.13848982054075 26.525775288544285 26.070908846594794 27.264826044320174 58-59 19.524788367578573 26.292165669375983 26.756742075755973 27.426303887289478 60-61 19.283226680848877 25.831632040350666 26.707440511931924 28.177700766868536 62-63 20.20595037636545 26.18005506113616 25.84614329046036 27.767851272038037 64-65 20.56939766339374 25.64319576368596 25.240322755891555 28.547083817028746 66-67 19.792315917681165 28.03106112156266 23.827345452050253 28.34927750870592 68-69 20.52808054128684 28.353814534363543 23.338278550051026 27.779826374298594 70-71 21.076688238926113 28.515973381508843 23.08593839328592 27.321399986279125 72-73 21.89115171751361 27.330993001875314 23.13440515940173 27.64345012120935 74-75 21.6702210990343 27.310619271693948 24.06074362918027 26.958416000091486 76 21.26113455227379 27.971024435982756 23.2667833007444 27.50105771099905 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 1.0 10 1.5 11 1.5 12 1.0 13 2.5 14 7.0 15 15.0 16 21.5 17 23.0 18 32.5 19 72.0 20 115.0 21 128.0 22 215.0 23 342.0 24 447.0 25 512.0 26 625.0 27 879.5 28 1173.5 29 1326.0 30 1500.0 31 1894.5 32 2411.5 33 2708.0 34 3058.0 35 3796.5 36 4667.5 37 5150.0 38 5567.5 39 6428.0 40 7405.0 41 8137.5 42 8336.0 43 8563.0 44 9079.0 45 9461.5 46 9555.0 47 9547.5 48 9500.0 49 9310.0 50 9160.0 51 8693.0 52 7903.5 53 7228.5 54 6876.0 55 6479.5 56 5665.5 57 4920.0 58 4592.0 59 4322.0 60 3820.0 61 3250.5 62 2913.0 63 2617.5 64 2190.0 65 1945.0 66 1706.0 67 1580.0 68 1510.5 69 1296.0 70 1124.5 71 1098.0 72 974.5 73 809.5 74 746.5 75 725.0 76 666.0 77 568.5 78 464.0 79 398.0 80 376.5 81 337.0 82 271.5 83 224.0 84 200.0 85 154.0 86 117.5 87 103.0 88 85.5 89 57.5 90 39.0 91 30.5 92 30.0 93 23.0 94 14.5 95 9.0 96 5.0 97 5.5 98 7.0 99 6.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.004001898043071857 7 0.009718895247460224 8 0.0028584986021941835 9 0.009147195527021387 10-11 0.003716048182852439 12-13 0.0 14-15 5.716997204388367E-4 16-17 8.575495806582551E-4 18-19 0.0031443484624136017 20-21 0.0 22-23 0.003716048182852439 24-25 0.004001898043071857 26-27 0.0011433994408776734 28-29 0.007432096365704878 30-31 8.575495806582551E-4 32-33 0.0 34-35 0.005716997204388367 36-37 0.023153838677772886 38-39 0.011148144548557315 40-41 0.0 42-43 5.716997204388367E-4 44-45 0.005716997204388367 46-47 0.004001898043071857 48-49 0.0 50-51 0.002572648741974765 52-53 0.01743684147338452 54-55 0.010004745107679642 56-57 0.01743684147338452 58-59 0.015150042591629173 60-61 0.028584986021941833 62-63 0.011719844268996152 64-65 0.027441586581064163 66-67 0.02058118993579812 68-69 2.8584986021941834E-4 70-71 5.716997204388367E-4 72-73 0.007432096365704878 74-75 0.01029059496789906 76 0.006288696924827203 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 174917.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 66.66247232158376 #Duplication Level Percentage of deduplicated Percentage of total 1 74.9354166736809 49.95380139915599 2 12.497983259865073 16.662929262727456 3 6.538476717477285 13.076130696124483 4 3.1999589034031413 8.532686873132699 5 1.4617347295733976 4.872142547584218 6 0.608907416041847 2.435476426097803 7 0.3044053821484386 1.4204690753407994 8 0.1695482291052529 0.9042003303921973 9 0.09220957072169814 0.5532226160418291 >10 0.19135911798297403 1.5889407734024985 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0028584986021941835 0.0 2 0.0 0.0 0.0 0.0034301983226330203 0.0 3 0.0 0.0 0.0 0.0034301983226330203 0.0 4 0.0 0.0 0.0 0.01600759217228743 0.0 5 0.0 0.0 0.0 0.018866090774481613 0.0 6 0.0 0.0 0.0 0.020581189935798123 0.0 7 0.0 0.0 0.0 0.022867988817553468 0.0 8 0.0 0.0 0.0 0.024011388258431143 0.0 9 0.0 0.0 0.0 0.024583087978869978 0.0 10 0.0 0.0 0.0 0.027441586581064163 0.0 11 0.0 0.0 0.0 0.028584986021941837 0.0 12 0.0 0.0 0.0 0.028584986021941837 0.0 13 0.0 0.0 0.0 0.029156685742380672 0.0 14 0.0 0.0 0.0 0.029156685742380672 0.0 15 0.0 0.0 0.0 0.029728385462819508 0.0 16 0.0 0.0 0.0 0.029728385462819508 0.0 17 0.0 0.0 0.0 0.03373028350589136 0.0 18 0.0 0.0 0.0 0.034301983226330206 0.0 19 0.0 0.0 0.0 0.03658878210808555 0.0 20 0.0 0.0 0.0 0.03716048182852438 0.0 21 0.0 0.0 0.0 0.0388755809898409 0.0 22 0.0 0.0 0.0 0.058313371484761345 0.0 23 0.0 0.0 0.0 0.058313371484761345 0.0 24 0.0 0.0 0.0 0.06117187008695553 0.0 25 5.716997204388367E-4 0.0 0.0 0.0623152695278332 0.0 26 5.716997204388367E-4 0.0 0.0 0.06803226673222157 0.0 27 5.716997204388367E-4 0.0 0.0 0.10633614800162362 0.0 28 5.716997204388367E-4 0.0 0.0 0.1389230320666373 0.0 29 5.716997204388367E-4 0.0 0.0 0.16121932116375196 0.0 30 5.716997204388367E-4 0.0 0.0 0.19266280578788797 0.0 31 5.716997204388367E-4 0.0 0.0 0.23554028482080072 0.0 32 5.716997204388367E-4 0.0 0.0 0.27270076664932513 0.0 33 5.716997204388367E-4 0.0 0.0 0.32358204176838157 0.0 34 5.716997204388367E-4 0.0 0.0 0.3881841101779701 0.0 35 5.716997204388367E-4 0.0 0.0 0.4785126660073063 0.0 36 5.716997204388367E-4 0.0 0.0 0.6814660667630934 0.0 37 5.716997204388367E-4 0.0 0.0 0.9890405163591875 0.0 38 5.716997204388367E-4 0.0 0.0 1.400092615354711 0.0 39 5.716997204388367E-4 0.0 0.0 1.824293807920328 0.0 40 5.716997204388367E-4 0.0 0.0 2.3937067294774095 0.0 41 5.716997204388367E-4 0.0 0.0 3.133486167725264 0.0 42 5.716997204388367E-4 0.0 0.0 4.072217108685834 0.0 43 5.716997204388367E-4 0.0 0.0 5.016665046850792 0.0 44 5.716997204388367E-4 0.0 0.0 5.783886071679711 0.0 45 5.716997204388367E-4 0.0 0.0 6.511088116077911 0.0 46 5.716997204388367E-4 0.0 0.0 7.282882738670341 0.0 47 5.716997204388367E-4 0.0 0.0 8.028950873843023 0.0 48 5.716997204388367E-4 0.0 0.0 8.655533767443988 0.0 49 5.716997204388367E-4 0.0 0.0 9.22952028676458 0.0 50 5.716997204388367E-4 0.0 0.0 9.790929412235517 0.0 51 5.716997204388367E-4 0.0 0.0 10.554720238741803 0.0 52 5.716997204388367E-4 0.0 0.0 11.44142650514244 0.0 53 5.716997204388367E-4 0.0 0.0 12.426465123458554 0.0 54 5.716997204388367E-4 0.0 0.0 13.231418329836437 0.0 55 5.716997204388367E-4 0.0 0.0 13.998639354665356 0.0 56 5.716997204388367E-4 0.0 0.0 14.682392220310204 0.0 57 5.716997204388367E-4 0.0 0.0 15.250661742426407 0.0 58 5.716997204388367E-4 0.0 0.0 15.752614096971707 0.0 59 5.716997204388367E-4 0.0 0.0 16.24656265543086 0.0 60 5.716997204388367E-4 0.0 0.0 16.717643225072464 0.0 61 5.716997204388367E-4 0.0 0.0 17.204159687165912 0.0 62 5.716997204388367E-4 0.0 0.0 17.729551730249202 0.0 63 5.716997204388367E-4 0.0 0.0 18.289817456279263 0.0 64 5.716997204388367E-4 0.0 0.0 18.878668168331266 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATATTCG 15 0.0022185019 70.02575 31 AAGTACG 15 0.0022235431 69.9857 24 TACGCTT 15 0.0022260668 69.96569 14 TGCGATG 15 0.0022260668 69.96569 2 ACGTTGC 25 2.3912007E-4 55.972557 15 CAACCGT 20 0.0069478415 52.48928 6 GACGGGT 20 0.0069478415 52.48928 23 TTCAACG 20 0.0069557047 52.474274 3 GCCGACT 40 7.472827E-7 52.474274 20 ACGTGTA 35 2.075627E-5 50.018394 34 CGATTTC 30 5.8550294E-4 46.683834 42 CGTGTAG 40 4.5688204E-5 43.766098 35 TCTTACG 40 4.5842848E-5 43.741066 11 TGGTCGC 65 9.909854E-9 43.09277 49 CCGTACC 35 0.0012505858 40.014717 55 TTGTGCA 35 0.0012558758 39.980396 2 GATACAC 45 9.196453E-5 38.86983 3 CGACGAG 45 9.196453E-5 38.86983 22 CGACGAT 65 4.857302E-7 37.673836 22 GTGTAGA 180 0.0 36.958035 36 >>END_MODULE