SRR1779872_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779872_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	174917
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	18283	10.45238598878325	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	2272	1.298901764837037	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	1079	0.6168639983535048	No Hit
ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT	639	0.3653161213604167	RNA PCR Primer, Index 47 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	586	0.3350160361771583	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGT	351	0.20066660187403168	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAACTCGTATGCCGT	343	0.196093004110521	No Hit
CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC	234	0.1337777345826878	No Hit
CTTTACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC	214	0.12234374017391104	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATATCGTATGCCGT	182	0.10404934911986828	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTCAG	15	0.0022169566	70.038055	64
CGTCAGT	15	0.0022169566	70.038055	65
ATCGTAT	50	1.4551915E-11	62.98019	39
AACTCGT	65	3.6379788E-12	53.829224	37
TCTCGTA	2550	0.0	53.10094	38
ATCTCGT	2565	0.0	52.79041	37
GATCTCG	2555	0.0	52.5862	36
TCGTATG	2770	0.0	52.546646	40
CTCGTAT	2705	0.0	52.515827	39
GCCGTCT	2755	0.0	52.49676	46
ATATCGT	40	7.463768E-7	52.48349	37
CGAGCGA	20	0.0069508753	52.48349	10
GATTACC	20	0.0069508753	52.48349	18
TAGCTCG	20	0.0069508753	52.48349	36
TGGTCGA	20	0.0069508753	52.48349	31
CGTCTTC	2745	0.0	52.43286	48
CGTATGC	2770	0.0	52.420334	41
TATGCCG	2750	0.0	52.419872	43
CCGTCTT	2755	0.0	52.36965	47
ATGCCGT	2760	0.0	52.229946	44