FastQCFastQC Report
Wed 25 May 2016
SRR1779871_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779871_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1922526
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGATCG459.205016E-538.8883124
ACGAGCG556.7022393E-638.1812524
CGACGAT1251.05501385E-1030.79633722
CGATCGA657.961984E-426.92267625
CGTCGAA808.680664E-526.2468822
GTCGTTG700.001227705624.99702614
AATCGTC1403.2906246E-722.4990828
AGAACCG1901.3573299E-820.2618035
TCGGACG1257.837013E-519.5976712
GACGATC900.005278584519.44415523
GACCGGT950.00721510818.419827
ATACCGT950.00721510818.419826
AACACCG2104.2799E-818.3321085
CGATTGG1150.001008454218.260625
ACGATAT1150.001008454218.260624
AGCGTGT1351.4137919E-418.1469358
CGACGCT1351.4143554E-418.1459922
GACGAAG77950.018.13909170
CTCGTAT2155.592119E-817.90857548
ACGAAGG56500.017.77803470
Produced by FastQC (version 0.11.5)