##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779871_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1922526 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.806939932151764 34.0 32.0 34.0 21.0 34.0 2 31.855540575264 34.0 34.0 34.0 24.0 34.0 3 31.554184442759162 34.0 34.0 34.0 23.0 34.0 4 31.65810761466945 34.0 34.0 34.0 24.0 34.0 5 32.43658031152765 34.0 34.0 34.0 31.0 34.0 6 35.21350400462725 38.0 36.0 38.0 27.0 38.0 7 35.45466225164185 38.0 37.0 38.0 31.0 38.0 8 34.4777194170586 38.0 35.0 38.0 24.0 38.0 9 35.42994321013084 38.0 37.0 38.0 31.0 38.0 10-11 33.9928003574464 37.5 34.5 38.0 19.5 38.0 12-13 35.05478391449583 38.0 36.0 38.0 27.0 38.0 14-15 33.73472478395611 37.5 34.0 38.0 18.0 38.0 16-17 34.5079616608566 38.0 35.0 38.0 26.0 38.0 18-19 35.580551576415616 38.0 36.5 38.0 31.0 38.0 20-21 34.02135315725249 38.0 35.0 38.0 19.0 38.0 22-23 35.060184881764926 38.0 36.5 38.0 27.5 38.0 24-25 35.38759215740125 38.0 36.5 38.0 29.0 38.0 26-27 34.23887479285066 38.0 34.5 38.0 23.5 38.0 28-29 35.68061342213318 38.0 36.5 38.0 31.5 38.0 30-31 36.10608101008777 38.0 37.0 38.0 34.0 38.0 32-33 36.19993305682212 38.0 37.0 38.0 34.0 38.0 34-35 36.09388169522805 38.0 37.0 38.0 33.0 38.0 36-37 35.554935537932906 38.0 37.0 38.0 29.5 38.0 38-39 35.51460110292396 38.0 37.0 38.0 29.5 38.0 40-41 35.52300619081355 38.0 37.0 38.0 29.0 38.0 42-43 35.92492273186423 38.0 37.0 38.0 32.5 38.0 44-45 35.96051496832813 38.0 37.0 38.0 33.0 38.0 46-47 35.87324826816386 38.0 37.0 38.0 32.0 38.0 48-49 35.62106728335534 38.0 37.0 38.0 29.5 38.0 50-51 34.94009027706257 38.0 36.0 38.0 27.5 38.0 52-53 35.52495336864105 38.0 36.5 38.0 31.0 38.0 54-55 35.6951833161164 38.0 37.0 38.0 32.5 38.0 56-57 35.75009154622616 38.0 37.0 38.0 31.5 38.0 58-59 36.05109553784968 38.0 37.0 38.0 34.0 38.0 60-61 35.869897468226696 38.0 37.0 38.0 32.0 38.0 62-63 35.92551388121669 38.0 37.0 38.0 32.5 38.0 64-65 35.933012609452355 38.0 37.0 38.0 32.0 38.0 66-67 35.654030686711124 38.0 37.0 38.0 31.0 38.0 68-69 34.97772825959181 38.0 36.0 38.0 27.0 38.0 70-71 35.04189176115173 38.0 36.0 38.0 27.5 38.0 72-73 35.381842690293915 38.0 36.5 38.0 31.0 38.0 74-75 35.49494389152604 38.0 36.5 38.0 30.0 38.0 76 34.49472828976045 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 52.0 13 559.0 14 1599.0 15 2571.0 16 3601.0 17 4431.0 18 5086.0 19 5543.0 20 6031.0 21 6608.0 22 7688.0 23 9113.0 24 10936.0 25 14080.0 26 17106.0 27 21468.0 28 26406.0 29 32864.0 30 41097.0 31 52583.0 32 67973.0 33 91520.0 34 128647.0 35 197949.0 36 365617.0 37 801395.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 44.42692693603867 18.38357032250883 10.595566966498675 26.593935774953824 2 22.587991007663877 22.43121809535996 31.130346221585558 23.850444675390605 3 20.63800437549349 22.091196686026613 30.68119754947397 26.589601389005924 4 14.694833775980143 18.632101724502036 34.799893473482285 31.87317102603554 5 14.456865602857908 32.812039993217255 35.33179785344905 17.39929655047578 6 28.467224285550806 37.044723947442336 19.526127981856582 14.961923785150278 7 27.46276001406578 30.72483504959436 21.908441340909988 19.903963595429868 8 24.732987147283733 34.5672474984044 20.73782050515144 19.961944849160428 9 24.51941033934931 18.786095594607783 21.780540865597196 34.91395320044571 10-11 24.229318473287368 25.151647320466036 26.209192806859715 24.409841399386885 12-13 24.860768751030548 23.69089856495716 26.78691156039388 24.661421123618414 14-15 23.340320726550186 24.850611960405928 24.788037513458967 27.021029799584916 16-17 23.50340869399673 27.491787431069948 25.155805390919845 23.84899848401348 18-19 22.058468210189687 27.246889212721076 27.244574474365834 23.450068102723407 20-21 22.88764885364359 26.81578818699981 27.437834390796272 22.85872856856032 22-23 23.297053748887503 27.084329227345762 26.45628530276305 23.162331721003685 24-25 22.58670428525208 27.67941391575559 26.445288157740055 23.288593641252277 26-27 22.716801100227773 27.316566719254144 26.79118611024852 23.175446070269558 28-29 22.31877747884402 27.375977170061404 27.289080040033543 23.016165311061034 30-31 22.439763892977854 27.460185028176586 27.060942992471333 23.039108086374224 32-33 21.95616283593859 27.706312118860417 27.30647315716215 23.03105188803885 34-35 22.256345275361593 27.285308257050623 27.576550596269144 22.881795871318637 36-37 22.925906011846653 27.30671153317398 26.881587849833505 22.88579460514586 38-39 22.653900555003855 27.268953441372418 27.311401950446566 22.765744053177162 40-41 22.22432595789038 27.092139114260245 27.454582716516878 23.2289522113325 42-43 21.736988761052604 26.577065098717252 27.83544541487669 23.850500725353456 44-45 21.793787426707116 25.953561753286476 28.616501874716505 23.636148945289907 46-47 21.398323709374296 25.986509985388505 28.80121240557016 23.81395389966704 48-49 21.02210146633103 26.168577223794088 29.179131863161857 23.630189446713025 50-51 21.447780238140197 26.296540772054446 28.90150799929882 23.354170990506535 52-53 20.128238542103976 26.661220001071644 28.96577860526865 24.24476285155573 54-55 20.332770219744347 26.742589464183762 28.63363673841488 24.291003577657005 56-57 19.987067292735937 26.668844660810358 28.709387605617977 24.634700440835726 58-59 19.668162988634784 26.264742343553372 29.32378350792735 24.74331115988449 60-61 20.165001726030226 26.20217940256722 29.179588047182147 24.453230824220405 62-63 20.252679580256316 26.87586224117159 28.32273674047347 24.548721438098628 64-65 20.64687902397149 26.2912997671787 27.51125736508721 25.550563843762603 66-67 20.658404206753122 26.388479552167567 27.172004229644187 25.781112011435127 68-69 20.85988271631267 26.311717237497906 27.030202057926118 25.79819798826331 70-71 21.597861971715236 26.233108749510407 26.797212407263594 25.37181687151076 72-73 21.973678495417627 26.60526143993991 26.047969213811445 25.37309085083102 74-75 22.28005661829004 26.60874961700463 25.867910424080563 25.243283340624767 76 22.394818740711806 26.428177960922085 25.871653453609344 25.305349844756762 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.5 2 0.5 3 1.0 4 2.0 5 1.0 6 1.5 7 4.5 8 6.0 9 6.5 10 15.5 11 32.0 12 40.0 13 73.5 14 173.0 15 343.0 16 647.0 17 847.0 18 1169.0 19 1942.0 20 3016.5 21 3640.0 22 4573.5 23 6827.0 24 9752.0 25 11357.0 26 13149.0 27 17010.0 28 21816.0 29 24553.0 30 27193.0 31 32518.0 32 38951.5 33 42700.0 34 46755.0 35 54581.5 36 62253.5 37 66154.0 38 70872.5 39 79817.5 40 87288.5 41 91862.0 42 93191.0 43 95570.5 44 99628.5 45 101219.5 46 101132.0 47 100373.0 48 97252.0 49 92261.0 50 89632.0 51 86497.5 52 79821.5 53 73612.5 54 70945.0 55 68036.0 56 61038.5 57 52875.5 58 48801.0 59 44596.0 60 36647.5 61 29667.0 62 26430.0 63 23874.5 64 19101.0 65 15395.5 66 12710.0 67 11512.0 68 10678.5 69 8868.0 70 7205.0 71 6519.0 72 5983.0 73 5040.5 74 4287.5 75 3941.0 76 3566.5 77 2961.0 78 2492.0 79 2254.0 80 1994.5 81 1627.0 82 1378.5 83 1238.0 84 1079.5 85 791.5 86 557.0 87 452.0 88 377.5 89 255.0 90 172.5 91 120.5 92 103.0 93 82.5 94 51.5 95 29.5 96 18.0 97 19.5 98 17.5 99 36.0 100 58.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.600745061445203E-4 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0034329834811076673 7 0.0067619371597575275 8 0.0027567897651319152 9 0.010402980245780812 10-11 0.002886827018204175 12-13 2.600745061445203E-4 14-15 8.322384196624649E-4 16-17 8.062309690480129E-4 18-19 0.0032509313268065036 20-21 0.0 22-23 0.002548730160216299 24-25 0.003745072888481092 26-27 7.802235184335609E-4 28-29 0.007178056369588759 30-31 4.1611920983123247E-4 32-33 1.0402980245780812E-4 34-35 0.003745072888481092 36-37 0.01973965501636909 38-39 0.0102469355420941 40-41 0.0010402980245780812 42-43 7.802235184335609E-4 44-45 0.005305519925348214 46-47 0.0034849983823365717 48-49 3.3809685798787635E-4 50-51 0.0023406705553006826 52-53 0.01295171040599711 54-55 0.009284659869359373 56-57 0.013939993529346287 58-59 0.013367829615828343 60-61 0.02525323454663292 62-63 0.010923129258069852 64-65 0.02345872045423573 66-67 0.019687640115140185 68-69 4.1611920983123247E-4 70-71 3.641043086023284E-4 72-73 0.005487572079649378 74-75 0.009310667319973827 76 0.003068879172505339 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 1922526.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.57858476126322 #Duplication Level Percentage of deduplicated Percentage of total 1 70.7129694691748 42.12978645239849 2 15.312642805764673 18.24611174644396 3 7.246795951321608 12.952615405001808 4 3.3383820815344434 7.955843192407286 5 1.4739187006951673 4.390699512028898 6 0.6288434541333908 2.247936182019106 7 0.2935003891541732 1.2240436468879954 8 0.1670405916572845 0.7961633638900065 9 0.1092802162019401 0.5859684561344813 >10 0.6748466332467081 7.719560155783539 >50 0.038694035634174465 1.5177309939637182 >100 0.0030856714816892795 0.23354089304071876 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 8.842533208913689E-4 0.0 2 0.0 0.0 0.0 0.0013003725307226014 0.0 3 0.0 0.0 0.0 0.001820521543011642 0.0 4 0.0 0.0 0.0 0.0023406705553006826 0.0 5 0.0 0.0 0.0 0.002548730160216299 0.0 6 1.0402980245780812E-4 0.0 0.0 0.002652759962674107 0.0 7 1.0402980245780812E-4 0.0 0.0 0.0030688791725053395 0.0 8 1.0402980245780812E-4 0.0 0.0 0.0031729089749631474 0.0 9 1.0402980245780812E-4 0.0 0.0 0.004681341110601365 0.0 10 1.0402980245780812E-4 0.0 0.0 0.004993430517974789 0.0 11 1.0402980245780812E-4 0.0 0.0 0.00577365403640835 0.0 12 1.0402980245780812E-4 0.0 0.0 0.005877683838866159 0.0 13 1.0402980245780812E-4 0.0 0.0 0.00603372854255287 0.0 14 1.0402980245780812E-4 0.0 0.0 0.006397832851155199 0.0 15 1.0402980245780812E-4 0.0 0.0 0.007074026567130951 0.0 16 1.0402980245780812E-4 0.0 0.0 0.007282086172046568 0.0 17 1.0402980245780812E-4 0.0 0.0 0.008270369295395746 0.0 18 1.0402980245780812E-4 0.0 0.0 0.008946563011371497 0.0 19 1.0402980245780812E-4 0.0 0.0 0.009726786529805059 0.0 20 1.0402980245780812E-4 0.0 0.0 0.011079173961756564 0.0 21 1.0402980245780812E-4 0.0 0.0 0.011755367677732317 0.0 22 1.0402980245780812E-4 0.0 0.0 0.013367829615828343 0.0 23 1.0402980245780812E-4 0.0 0.0 0.01383596372688848 0.0 24 1.0402980245780812E-4 0.0 0.0 0.01602058957850245 0.0 25 1.0402980245780812E-4 0.0 0.0 0.01830924523257423 0.0 26 1.0402980245780812E-4 0.0 0.0 0.02720379334271682 0.0 27 1.0402980245780812E-4 0.0 0.0 0.07724212832492253 0.0 28 1.0402980245780812E-4 0.0 0.0 0.10751480084014468 0.0 29 1.0402980245780812E-4 0.0 0.0 0.1244196437395385 0.0 30 1.0402980245780812E-4 0.0 0.0 0.15105127316873737 0.0 31 1.0402980245780812E-4 0.0 0.0 0.17503014263526215 0.0 32 1.0402980245780812E-4 0.0 0.0 0.21248087152007308 0.0 33 1.0402980245780812E-4 0.0 0.0 0.24540630399796934 0.0 34 1.0402980245780812E-4 0.0 0.0 0.2927918790175009 0.0 35 1.0402980245780812E-4 0.0 0.0 0.37154243947806165 0.0 36 1.0402980245780812E-4 0.0 0.0 0.5103702108580066 0.0 37 1.0402980245780812E-4 0.0 0.0 0.7732535216688877 0.0 38 1.0402980245780812E-4 0.0 0.0 1.1538465539607787 0.0 39 1.0402980245780812E-4 0.0 0.0 1.5822932953832614 0.0 40 1.0402980245780812E-4 0.0 0.0 2.0830927644151496 0.0 41 1.0402980245780812E-4 5.201490122890406E-5 0.0 2.8253974198528393 0.0 42 1.0402980245780812E-4 5.201490122890406E-5 0.0 3.8186739737199913 0.0 43 1.0402980245780812E-4 5.201490122890406E-5 0.0 4.913431599884735 0.0 44 1.0402980245780812E-4 5.201490122890406E-5 0.0 5.780103884160734 0.0 45 1.0402980245780812E-4 5.201490122890406E-5 0.0 6.50264287713144 0.0 46 1.0402980245780812E-4 5.201490122890406E-5 0.0 7.222789184645618 0.0 47 1.0402980245780812E-4 5.201490122890406E-5 0.0 7.9506857124429 0.0 48 1.0402980245780812E-4 5.201490122890406E-5 0.0 8.617204656790078 0.0 49 1.0402980245780812E-4 5.201490122890406E-5 0.0 9.2620333873248 0.0 50 1.0402980245780812E-4 5.201490122890406E-5 0.0 9.946289412991034 0.0 51 1.0402980245780812E-4 5.201490122890406E-5 0.0 10.758398065877913 0.0 52 1.0402980245780812E-4 5.201490122890406E-5 0.0 11.837291147167841 0.0 53 1.0402980245780812E-4 5.201490122890406E-5 0.0 13.083048031600093 0.0 54 1.0402980245780812E-4 5.201490122890406E-5 0.0 14.079341449738521 0.0 55 1.0402980245780812E-4 5.201490122890406E-5 0.0 14.86492250299866 1.0402980245780812E-4 56 1.0402980245780812E-4 5.201490122890406E-5 0.0 15.55739688305906 1.0402980245780812E-4 57 1.0402980245780812E-4 5.201490122890406E-5 0.0 16.225892393652934 1.0402980245780812E-4 58 1.0402980245780812E-4 5.201490122890406E-5 0.0 16.86115038236154 1.0402980245780812E-4 59 1.0402980245780812E-4 5.201490122890406E-5 0.0 17.44621399138425 1.0402980245780812E-4 60 1.0402980245780812E-4 5.201490122890406E-5 0.0 18.042512819072407 1.0402980245780812E-4 61 1.0402980245780812E-4 1.0402980245780812E-4 0.0 18.64853843329037 1.0402980245780812E-4 62 1.0402980245780812E-4 1.0402980245780812E-4 0.0 19.28442060081372 1.0402980245780812E-4 63 1.0402980245780812E-4 1.0402980245780812E-4 0.0 19.95936595915998 1.0402980245780812E-4 64 1.0402980245780812E-4 1.0402980245780812E-4 0.0 20.638680569209466 1.0402980245780812E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGATCG 45 9.205016E-5 38.88831 24 ACGAGCG 55 6.7022393E-6 38.18125 24 CGACGAT 125 1.05501385E-10 30.796337 22 CGATCGA 65 7.961984E-4 26.922676 25 CGTCGAA 80 8.680664E-5 26.24688 22 GTCGTTG 70 0.0012277056 24.997026 14 AATCGTC 140 3.2906246E-7 22.49908 28 AGAACCG 190 1.3573299E-8 20.261803 5 TCGGACG 125 7.837013E-5 19.59767 12 GACGATC 90 0.0052785845 19.444155 23 GACCGGT 95 0.007215108 18.41982 7 ATACCGT 95 0.007215108 18.41982 6 AACACCG 210 4.2799E-8 18.332108 5 CGATTGG 115 0.0010084542 18.2606 25 ACGATAT 115 0.0010084542 18.2606 24 AGCGTGT 135 1.4137919E-4 18.146935 8 CGACGCT 135 1.4143554E-4 18.14599 22 GACGAAG 7795 0.0 18.139091 70 CTCGTAT 215 5.592119E-8 17.908575 48 ACGAAGG 5650 0.0 17.778034 70 >>END_MODULE