##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779871_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1922526 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.53724370957792 34.0 34.0 34.0 34.0 34.0 2 33.63869773412687 34.0 34.0 34.0 34.0 34.0 3 33.76054680144768 34.0 34.0 34.0 34.0 34.0 4 33.561601767674404 34.0 34.0 34.0 34.0 34.0 5 33.62517281950933 34.0 34.0 34.0 34.0 34.0 6 37.292808003636885 38.0 38.0 38.0 37.0 38.0 7 37.34442863191447 38.0 38.0 38.0 37.0 38.0 8 37.25284391472469 38.0 38.0 38.0 36.0 38.0 9 37.1557945120118 38.0 38.0 38.0 36.0 38.0 10-11 37.13144633674655 38.0 38.0 38.0 35.5 38.0 12-13 37.284983141970514 38.0 38.0 38.0 36.5 38.0 14-15 37.29311489155413 38.0 38.0 38.0 36.5 38.0 16-17 37.264268727705115 38.0 38.0 38.0 36.0 38.0 18-19 37.16385162021216 38.0 38.0 38.0 36.0 38.0 20-21 37.14045349711785 38.0 38.0 38.0 36.0 38.0 22-23 37.108541574990404 38.0 38.0 38.0 36.0 38.0 24-25 37.313096675935725 38.0 38.0 38.0 36.5 38.0 26-27 37.24428330228044 38.0 38.0 38.0 36.5 38.0 28-29 36.8213493601647 38.0 37.0 38.0 35.0 38.0 30-31 37.11090773284731 38.0 38.0 38.0 36.0 38.0 32-33 37.176175250685816 38.0 38.0 38.0 36.0 38.0 34-35 37.262346256955695 38.0 38.0 38.0 37.0 38.0 36-37 37.238284683796216 38.0 38.0 38.0 36.5 38.0 38-39 37.160974155876175 38.0 38.0 38.0 36.0 38.0 40-41 37.09800673697001 38.0 38.0 38.0 36.0 38.0 42-43 37.2376914538477 38.0 38.0 38.0 36.5 38.0 44-45 37.02024628015434 38.0 38.0 38.0 36.0 38.0 46-47 37.137888642338254 38.0 38.0 38.0 36.0 38.0 48-49 36.834929670652045 38.0 37.5 38.0 35.0 38.0 50-51 37.032658335960086 38.0 38.0 38.0 36.0 38.0 52-53 36.95978753993444 38.0 38.0 38.0 36.0 38.0 54-55 36.944357579559394 38.0 38.0 38.0 36.0 38.0 56-57 36.828731314947106 38.0 37.0 38.0 35.0 38.0 58-59 36.95646664856548 38.0 38.0 38.0 36.0 38.0 60-61 36.70399438031007 38.0 37.0 38.0 34.5 38.0 62-63 36.50003745072888 38.0 37.0 38.0 34.0 38.0 64-65 36.77817023020755 38.0 37.0 38.0 35.0 38.0 66-67 36.628787595070236 38.0 37.0 38.0 34.5 38.0 68-69 36.792871461816375 38.0 37.0 38.0 35.0 38.0 70-71 36.752059790088666 38.0 37.0 38.0 35.0 38.0 72-73 36.68709135793222 38.0 37.0 38.0 35.0 38.0 74-75 36.69491751997113 38.0 37.5 38.0 35.0 38.0 76 36.383637984609834 38.0 37.0 38.0 34.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 4.0 21 31.0 22 72.0 23 189.0 24 335.0 25 726.0 26 1392.0 27 2541.0 28 4312.0 29 7149.0 30 12004.0 31 19110.0 32 30674.0 33 48771.0 34 79970.0 35 138361.0 36 270870.0 37 1306014.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.51253563655553 18.171494710853395 10.693933120372712 24.62203653221836 2 23.421061665746006 22.590279663317947 30.64052189671297 23.34813677422308 3 20.65714585914573 22.50050194379686 30.408899541540663 26.433452655516753 4 15.1819013110876 18.641152317315864 35.48108061997601 30.695865751620527 5 14.508048265667147 32.6521461868396 35.62120876388668 17.218596783606568 6 28.6856978787283 36.64928328667597 20.104539548489853 14.560479286105885 7 27.802952989972567 30.408223347824688 22.17764545186905 19.611178210333698 8 25.145407656385398 34.832662861256495 21.1733937538426 18.848535728515508 9 24.83024936983947 19.140287309508427 21.95226488484421 34.077198435807894 10-11 24.649315535914727 26.00583815251393 27.336743430257897 22.008102881313437 12-13 25.137605421201066 23.623607691131355 27.10033570417253 24.138451183495047 14-15 22.9247354782198 24.391711737578582 24.493504899283547 28.190047884918073 16-17 23.24028387652495 27.98471906231697 25.30428717218909 23.47070988896899 18-19 22.485521652242934 27.108710103270383 27.267979730833293 23.13778851365339 20-21 22.455977188344917 27.091675223117917 26.97331531537155 23.47903227316562 22-23 22.511763169912914 27.582123726805257 26.92468138272252 22.981431720559307 24-25 23.081056310445287 27.477434365512043 26.793950386553362 22.647558937489304 26-27 22.6927750261895 27.408393956700717 27.028295065970497 22.87053595113928 28-29 22.73657157302424 26.90330325831744 27.368108415698927 22.992016752959387 30-31 22.415899706948046 27.069516875194406 28.097305316026937 22.41727810183061 32-33 21.86337141864401 28.15124476860131 27.54932833158043 22.436055481174247 34-35 22.12583861024506 27.320566795975708 27.648390710970876 22.905203882808348 36-37 22.894150716297204 27.465168221392066 27.167903060868877 22.472778001441853 38-39 22.20633166989679 27.056019008325507 27.847425730523277 22.890223591254422 40-41 22.04893457877813 26.23488577007541 28.334779347587496 23.381400303558962 42-43 22.138535612048063 25.816683497904958 28.640196326013328 23.40458456403365 44-45 21.823710056456974 25.950910416816207 29.27567689591714 22.949702630809675 46-47 21.65734039487632 25.55611731648883 29.087825080128955 23.698717208505894 48-49 21.15633286623952 25.610967029834708 29.437157156782273 23.795542947143495 50-51 20.673982703812346 25.915902769486564 29.863326978686832 23.546787548014258 52-53 19.973874512325963 26.25765006935924 30.11843103464424 23.650044383670554 54-55 19.99831379934056 26.31068923712171 29.43539080172336 24.255606161814374 56-57 19.9886750895688 26.02707465489209 29.09237296427449 24.89187729126462 58-59 19.20775556674895 25.595727475949232 30.388527647457963 24.807989309843855 60-61 19.87226817647056 26.08009828086536 29.312835258312482 24.7347982843516 62-63 19.527625507400508 27.15873665435525 28.132524180790284 25.181113657453956 64-65 20.015914176857542 27.511418642997775 26.950858801088657 25.521808379056026 66-67 19.737763675096705 27.32357743714414 26.27184305367217 26.666815834086975 68-69 19.538845967873876 27.380087544825173 26.546151427213697 26.534915060087254 70-71 20.183499602156548 26.820397156752403 26.483628332280308 26.512474908810745 72-73 20.773887255794595 26.77804947842148 25.993730652168257 26.454332613615673 74-75 21.07815837998701 27.364393934861642 25.726115714990623 25.83133197016072 76 21.04297449892911 27.152587641560622 25.568388431579315 26.23604942793095 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 0.0 8 0.0 9 2.5 10 11.0 11 32.0 12 47.0 13 94.5 14 208.5 15 375.5 16 694.0 17 912.0 18 1255.0 19 2139.5 20 3327.0 21 3973.0 22 4988.5 23 7481.0 24 10361.5 25 11765.0 26 13902.5 27 18040.5 28 22666.0 29 25291.0 30 27865.0 31 33498.5 32 40174.5 33 43791.0 34 47748.5 35 55048.5 36 62835.5 37 67280.0 38 70946.0 39 81395.0 40 92564.0 41 98118.0 42 99286.0 43 99434.5 44 100859.0 45 100686.0 46 99237.0 47 98313.5 48 95132.5 49 89950.5 50 87026.0 51 84147.5 52 77089.5 53 70913.5 54 68917.0 55 66202.0 56 59486.5 57 51623.0 58 47760.0 59 43147.5 60 35131.5 61 28618.0 62 25508.0 63 22913.0 64 18693.5 65 15371.0 66 12436.5 67 11200.0 68 10216.5 69 8394.0 70 6987.0 71 6419.0 72 5870.5 73 4936.0 74 4192.0 75 3834.0 76 3436.0 77 2798.0 78 2369.0 79 2180.0 80 1954.0 81 1549.5 82 1210.5 83 1050.0 84 950.0 85 688.5 86 412.5 87 298.0 88 261.0 89 179.5 90 112.0 91 57.0 92 25.0 93 18.0 94 8.5 95 3.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.054303556882975834 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0011963427282647933 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 4.941415616745885E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.01615062683157471 52-53 0.03370565599632983 54-55 0.0544335941360481 56-57 0.05711236154933665 58-59 0.03942729513150928 60-61 0.03573423714425709 62-63 0.031078903484270178 64-65 0.01771107386844183 66-67 0.038907146119220234 68-69 0.010220928091479647 70-71 0.014954284103309916 72-73 0.02475909298495833 74-75 0.015318388411912244 76 0.015240366060068887 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 1922526.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.32792956295101 #Duplication Level Percentage of deduplicated Percentage of total 1 42.40008189285325 15.827072703597805 2 22.55894700247877 16.84157569445745 3 14.92273501665613 16.711044047649676 4 9.023240002383886 13.472754689543507 5 4.903655940241642 9.152166176914317 6 2.4406117444214095 5.466178997176403 7 1.178005339136507 3.078075022684743 8 0.5981922234597025 1.786342174592706 9 0.30109904449453523 1.0115463531927478 >10 1.5175032077433095 11.183480323314905 >50 0.13063988395248188 3.249319266376132 >100 0.02473017289363201 1.2265850287899338 >500 1.3963232120211788E-4 0.0275724610333778 >1k 2.7926464240423505E-4 0.1581377065695048 >5k 0.0 0.0 >10k+ 1.3963232120211752E-4 0.8081493541068463 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT 15505 0.8064910435541575 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0012483576294936973 0.0 2 0.0 0.0 0.0 0.001872536444240546 0.0 3 0.0 0.0 0.0 0.0024447003577584905 0.0 4 0.0 0.0 0.0 0.003016864271276435 0.0 5 0.0 0.0 0.0 0.0032249238761920514 0.0 6 0.0 0.0 0.0 0.0033809685798787638 0.0 7 0.0 0.0 0.0 0.004005147394625612 0.0 8 0.0 0.0 0.0 0.00410917719708342 0.0 9 0.0 0.0 0.0 0.005877683838866159 0.0 10 0.0 0.0 0.0 0.0062938030486973905 0.0 11 0.0 0.0 0.0 0.007230071270817664 0.0 12 0.0 0.0 0.0 0.00743813087573328 0.0 13 0.0 0.0 0.0 0.007854250085564512 0.0 14 0.0 0.0 0.0 0.008062309690480128 0.0 15 0.0 0.0 0.0 0.008946563011371497 0.0 16 0.0 0.0 0.0 0.009154622616287115 0.0 17 0.0 0.0 0.0 0.010454995147009715 0.0 18 0.0 0.0 0.0 0.011339248467901084 0.0 19 0.0 0.0 0.0 0.012119471986334646 0.0 20 0.0 0.0 0.0 0.013419844517057246 0.0 21 0.0 0.0 0.0 0.014252082936719711 0.0 22 0.0 0.0 0.0 0.015708500171129024 0.0 23 0.0 0.0 0.0 0.01628066408464697 0.0 24 0.0 0.0 0.0 0.017529021714140666 0.0 25 0.0 0.0 0.0 0.019973722071899156 0.0 26 0.0 0.0 0.0 0.029596478799246408 0.0 27 0.0 0.0 0.0 0.08291175255887306 0.0 28 0.0 0.0 0.0 0.11432875290113112 0.0 29 0.0 0.0 0.0 0.1320658342201874 0.0 30 0.0 0.0 0.0 0.1602058957850245 0.0 31 0.0 0.0 0.0 0.18652543580684994 0.0 32 0.0 0.0 0.0 0.22590071603713033 0.0 33 0.0 0.0 0.0 0.2623111468973632 0.0 34 0.0 0.0 0.0 0.3130256755955446 0.0 35 0.0 0.0 0.0 0.3965095920679356 0.0 36 5.201490122890406E-5 0.0 0.0 0.5482370589526487 0.0 37 5.201490122890406E-5 0.0 0.0 0.8246442440830449 0.0 38 5.201490122890406E-5 0.0 0.0 1.2206857020399204 0.0 39 5.201490122890406E-5 0.0 0.0 1.6603156472266174 0.0 40 5.201490122890406E-5 0.0 0.0 2.1906075652552945 0.0 41 5.201490122890406E-5 0.0 0.0 2.9658896680721094 0.0 42 5.201490122890406E-5 0.0 0.0 4.007800154588287 0.0 43 5.201490122890406E-5 0.0 0.0 5.158473799574102 0.0 44 5.201490122890406E-5 0.0 0.0 6.056771143797275 0.0 45 5.201490122890406E-5 0.0 0.0 6.813327882171684 0.0 46 5.201490122890406E-5 0.0 0.0 7.574617976557924 0.0 47 5.201490122890406E-5 0.0 0.0 8.327481656945082 0.0 48 5.201490122890406E-5 0.0 0.0 9.025313571832058 0.0 49 5.201490122890406E-5 0.0 0.0 9.71388683430029 0.0 50 5.201490122890406E-5 0.0 0.0 10.42056128239618 0.0 51 5.201490122890406E-5 0.0 0.0 11.250875150713176 0.0 52 5.201490122890406E-5 0.0 0.0 12.34183568908821 0.0 53 5.201490122890406E-5 0.0 0.0 13.593990406371617 0.0 54 5.201490122890406E-5 0.0 0.0 14.598970313015272 0.0 55 5.201490122890406E-5 0.0 0.0 15.384655396077868 0.0 56 5.201490122890406E-5 0.0 0.0 16.077597910249327 0.0 57 5.201490122890406E-5 0.0 0.0 16.75530005836072 0.0 58 5.201490122890406E-5 0.0 0.0 17.393366851735685 0.0 59 5.201490122890406E-5 0.0 0.0 17.995387318559022 0.0 60 5.201490122890406E-5 0.0 0.0 18.599436366530284 0.0 61 5.201490122890406E-5 0.0 0.0 19.214928692771906 0.0 62 5.201490122890406E-5 0.0 0.0 19.863866600503712 0.0 63 5.201490122890406E-5 0.0 0.0 20.556809114675172 0.0 64 5.201490122890406E-5 0.0 0.0 21.262495279647712 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATGCCG 2260 0.0 51.09334 43 CGTATGC 2325 0.0 49.815426 41 CTCGTAT 2300 0.0 49.748352 39 TCGTATG 2335 0.0 49.452225 40 CCGTCTT 2330 0.0 49.134647 47 CGTCTTC 2330 0.0 48.990765 48 GCCGTCT 2345 0.0 48.67106 46 ATGCCGT 2365 0.0 48.529015 44 TGCCGTC 2390 0.0 47.88744 45 TCTCGTA 2255 0.0 47.79285 38 ATCTCGT 2350 0.0 45.8608 37 GTATGCC 2610 0.0 44.241745 42 GATCTCG 2690 0.0 39.67403 36 CTGCTTG 3170 0.0 37.01177 54 AGATCTC 2920 0.0 36.309357 35 ACAGATC 2925 0.0 36.127663 33 GTCTTCT 3180 0.0 35.898552 49 CTTGAAA 3235 0.0 34.966213 57 CAGATCT 3090 0.0 34.198513 34 TGCTTGA 3400 0.0 33.88909 55 >>END_MODULE