##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779870_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 209024 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.045506736068585 34.0 23.0 34.0 12.0 34.0 2 29.719850352112676 34.0 31.0 34.0 12.0 34.0 3 29.429725773116964 34.0 27.0 34.0 11.0 34.0 4 29.485327043784444 34.0 27.0 34.0 12.0 34.0 5 30.111451316595222 34.0 32.0 34.0 11.0 34.0 6 32.7149609614207 37.0 32.0 38.0 12.0 38.0 7 32.98542272657685 38.0 34.0 38.0 12.0 38.0 8 32.299511060930804 37.0 31.0 38.0 11.0 38.0 9 33.17630511328843 38.0 34.0 38.0 12.0 38.0 10-11 31.75377468616044 37.0 28.5 38.0 11.5 38.0 12-13 32.591955947642376 37.0 31.5 38.0 11.0 38.0 14-15 31.385391151255355 37.0 27.0 38.0 11.0 38.0 16-17 31.987774131200247 37.0 30.0 38.0 11.0 38.0 18-19 32.81524609614207 37.5 33.5 38.0 11.0 38.0 20-21 31.554075130128595 37.0 27.5 38.0 11.0 38.0 22-23 32.42713994565217 37.5 31.5 38.0 11.0 38.0 24-25 32.74438102801592 37.5 32.5 38.0 11.0 38.0 26-27 31.697639983925292 37.0 29.0 38.0 11.0 38.0 28-29 32.8402432256583 37.5 32.5 38.0 11.0 38.0 30-31 33.19917808481323 38.0 34.0 38.0 11.0 38.0 32-33 33.302453306797304 38.0 34.0 38.0 11.0 38.0 34-35 33.24862695192896 38.0 34.0 38.0 11.0 38.0 36-37 32.75375554960196 38.0 32.5 38.0 11.0 38.0 38-39 32.69539383037355 38.0 32.5 38.0 11.0 38.0 40-41 32.714470587109616 38.0 33.0 38.0 11.0 38.0 42-43 33.06667894595836 38.0 34.0 38.0 11.0 38.0 44-45 33.151140538885485 38.0 34.0 38.0 11.0 38.0 46-47 33.051274016380894 38.0 34.0 38.0 11.0 38.0 48-49 32.761345587109616 38.0 33.0 38.0 11.0 38.0 50-51 32.1773337033068 37.5 30.5 38.0 11.0 38.0 52-53 32.728234556797304 37.0 33.0 38.0 11.0 38.0 54-55 32.8576790225046 38.0 33.0 38.0 11.0 38.0 56-57 32.92194915416411 38.0 34.0 38.0 11.0 38.0 58-59 33.1198235609308 38.0 34.0 38.0 11.0 38.0 60-61 33.01595271356399 38.0 34.0 38.0 11.0 38.0 62-63 33.00986968003674 38.0 34.0 38.0 11.0 38.0 64-65 33.00092333894672 38.0 34.0 38.0 11.0 38.0 66-67 32.85747091243111 38.0 33.0 38.0 11.0 38.0 68-69 32.268000325321495 37.0 31.0 38.0 11.0 38.0 70-71 32.328235035211264 37.0 31.0 38.0 11.0 38.0 72-73 32.496636749846914 37.0 31.5 38.0 11.0 38.0 74-75 32.57603911512554 37.5 32.0 38.0 11.0 38.0 76 31.697953345070424 37.0 28.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 121.0 13 933.0 14 2340.0 15 3426.0 16 4302.0 17 4907.0 18 5026.0 19 4652.0 20 3662.0 21 2730.0 22 2244.0 23 1922.0 24 1808.0 25 1875.0 26 2076.0 27 2235.0 28 2654.0 29 3191.0 30 4001.0 31 4933.0 32 6391.0 33 8571.0 34 12173.0 35 18491.0 36 33510.0 37 70846.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.45222774527205 19.580620314510846 10.172564741679144 31.79458719853796 2 21.67885027556644 21.07509185548071 31.493034292712796 25.753023576240047 3 17.87258879363135 23.42506123698714 30.754841549295776 27.947508420085732 4 14.799735915492956 21.944370024494795 31.328938303735455 31.926955756276794 5 14.114168707899571 33.539689222290264 34.66156996325781 17.684572106552356 6 28.483740868142437 38.34160203998641 16.784437927289602 16.39021916458155 7 26.860530206255113 30.588049547157354 19.72030447866879 22.831115767918742 8 23.510386864037816 36.97503516510856 18.690135589003606 20.82444238185002 9 23.550069374671068 18.274723697430744 19.74307449404335 38.43213243385484 10-11 23.0133480049756 27.084728734092433 24.688785762128028 25.213137498803945 12-13 22.978995184751955 23.65021157908082 26.24776639947183 27.123026836695395 14-15 24.28303173103374 25.685273116530517 22.3509430802904 27.680752072145342 16-17 24.581924998863762 26.86444347166706 23.150746207962264 25.40288532150691 18-19 21.654542540492827 27.076072213703572 25.63816121539481 25.631224030408788 20-21 24.02260027556644 26.264448101653397 24.881592544396817 24.831359078383343 22-23 24.56822313654196 25.917615539182854 24.220170318629798 25.293991005645395 24-25 21.6591912160465 28.548805722008925 24.11688016553638 25.675122896408197 26-27 23.23853537999316 28.286053960439855 24.54269496013606 23.932715699430926 28-29 21.748657933265072 27.950872223763913 26.019587954412792 24.280881888558223 30-31 22.330928505817514 27.345902862829146 25.406173453766073 24.91699517758726 32-33 21.34276446723821 28.223553276178816 25.586296310471525 24.84738594611145 34-35 21.668811627762334 28.321858987546467 25.625666811790428 24.383662572900768 36-37 23.375784444375327 26.742525199116685 25.554882994274724 24.326807362233264 38-39 23.02359296278044 26.034554527925437 26.865164614861985 24.076687894432137 40-41 22.05219596210889 26.989044110611427 26.373313558511146 24.585446368768537 42-43 20.629069528233735 26.900388952411937 26.79776866660607 25.67277285274826 44-45 20.10506448117236 25.456128641792798 28.084654413928224 26.35415246310663 46-47 20.76669138578571 25.616104107360716 27.771451809678734 25.845752697174845 48-49 20.844785394943628 25.888476654538845 27.747119343040378 25.519618607477152 50-51 22.942357052810863 25.790895107872707 26.430787558098643 24.83596028121778 52-53 18.693390877468314 27.308025397250706 27.364963468724728 26.633620256556252 54-55 19.368382272024803 26.548901211944326 26.86396845978287 27.218748056248 56-57 19.592569111331745 26.83708745529146 26.711245618861923 26.859097814514875 58-59 19.412858171587427 26.924981638360634 26.808471952745393 26.853688237306546 60-61 18.942625873029925 26.215662019280234 27.061475184296345 27.780236923393492 62-63 19.398132531417538 26.631881894454295 26.514417498606456 27.455568075521715 64-65 20.189885078373056 25.997458947161896 25.68521092891991 28.12744504554514 66-67 19.66098045314257 27.567528770007417 24.472091298418547 28.299399478431464 68-69 19.94177688154681 28.531241702487996 23.95496200188017 27.57201941408502 70-71 20.52850390385793 28.711296310471525 23.83027786282915 26.929921922841398 72-73 21.34648415633627 27.772700958322766 23.46335838783605 27.417456497504915 74-75 21.335495924806885 27.54553044493406 23.77845877081554 27.340514859443516 76 21.50628175563827 28.134419045249693 23.23149202461032 27.12780717450172 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.5 10 3.0 11 2.0 12 1.0 13 1.5 14 4.0 15 18.0 16 30.5 17 31.0 18 38.5 19 64.0 20 133.5 21 185.0 22 216.0 23 279.5 24 431.0 25 550.0 26 652.5 27 846.5 28 1152.0 29 1366.0 30 1550.5 31 1972.5 32 2724.0 33 3238.0 34 3623.0 35 4592.0 36 5592.5 37 6009.0 38 6597.5 39 8035.0 40 9378.5 41 10162.5 42 10452.0 43 11022.0 44 12007.5 45 12725.5 46 13028.0 47 12906.5 48 12600.0 49 12018.0 50 11621.0 51 11242.0 52 10173.5 53 9045.0 54 8606.0 55 7957.0 56 6733.0 57 5669.5 58 5181.0 59 4561.5 60 3658.5 61 3039.5 62 2704.0 63 2462.5 64 2012.0 65 1697.5 66 1488.5 67 1385.0 68 1261.5 69 1040.0 70 877.0 71 812.0 72 800.0 73 695.5 74 571.0 75 539.0 76 491.5 77 428.5 78 371.0 79 329.0 80 292.0 81 242.5 82 208.5 83 187.0 84 161.5 85 123.0 86 90.5 87 71.0 88 62.0 89 40.0 90 26.5 91 27.0 92 28.0 93 25.5 94 21.5 95 14.5 96 9.0 97 8.5 98 9.0 99 9.5 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 4.7841396203306797E-4 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0014352418860992039 7 0.005262553582363748 8 0.00478413962033068 9 0.006697795468462952 10-11 0.0019136558481322719 12-13 2.3920698101653398E-4 14-15 7.176209430496019E-4 16-17 2.3920698101653398E-4 18-19 0.002631276791181874 20-21 0.0 22-23 0.0019136558481322719 24-25 0.0031096907532149423 26-27 2.3920698101653398E-4 28-29 0.008611451316595223 30-31 0.0 32-33 0.0 34-35 0.003348897734231476 36-37 0.018418937538273117 38-39 0.010046693202694428 40-41 0.0019136558481322719 42-43 4.7841396203306797E-4 44-45 0.004544932639314146 46-47 0.0043057256582976116 48-49 2.3920698101653398E-4 50-51 0.0021528628291488058 52-53 0.011960349050826699 54-55 0.010046693202694428 56-57 0.015070039804041641 58-59 0.013634797917942438 60-61 0.025595146968769137 62-63 0.011721142069810165 64-65 0.026551974892835273 66-67 0.01865814451928965 68-69 2.3920698101653398E-4 70-71 0.0 72-73 0.0062193815064298845 74-75 0.007415416411512553 76 0.0028704837721984077 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 209024.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.11432469733885 #Duplication Level Percentage of deduplicated Percentage of total 1 72.0872908318247 41.89304225952159 2 12.132121026113886 14.101000411579884 3 6.770415666104486 11.803744030678375 4 3.726633146688027 8.662830748579745 5 1.9626883774502037 5.703015482341715 6 1.1151000721427196 3.888197259751679 7 0.5651002017379542 2.2988291627231807 8 0.3638440812467129 1.6915642461421128 9 0.2671978034706125 1.397521791837622 >10 1.0066509614146948 8.464567838638638 >50 0.002957831805997047 0.09568676820543125 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00239206981016534 0.0 2 0.0 0.0 0.0 0.0028704837721984077 0.0 3 0.0 0.0 0.0 0.003348897734231476 0.0 4 0.0 0.0 0.0 0.003348897734231476 0.0 5 0.0 0.0 0.0 0.0043057256582976116 0.0 6 0.0 0.0 0.0 0.005740967544396815 0.0 7 0.0 0.0 0.0 0.006219381506429884 0.0 8 0.0 0.0 0.0 0.006697795468462952 0.0 9 0.0 0.0 0.0 0.011003521126760563 0.0 10 0.0 0.0 0.0 0.01626607470912431 0.0 11 0.0 0.0 0.0 0.01865814451928965 0.0 12 0.0 0.0 0.0 0.01913655848132272 0.0 13 0.0 0.0 0.0 0.019614972443355787 0.0 14 0.0 0.0 0.0 0.019614972443355787 0.0 15 0.0 0.0 0.0 0.020571800367421924 0.0 16 0.0 0.0 0.0 0.020571800367421924 0.0 17 0.0 0.0 0.0 0.022485456215554193 0.0 18 0.0 0.0 0.0 0.024399112063686466 0.0 19 0.0 0.0 0.0 0.02583435394978567 0.0 20 0.0 0.0 0.0 0.02631276791181874 0.0 21 0.0 0.0 0.0 0.029183251684017145 0.0 22 0.0 0.0 0.0 0.04592774035517452 0.0 23 0.0 0.0 0.0 0.04592774035517452 0.0 24 0.0 0.0 0.0 0.048319810165339865 0.0 25 0.0 0.0 0.0 0.050711879975505206 0.0 26 0.0 0.0 0.0 0.05501760563380282 0.0 27 0.0 0.0 0.0 0.08180878750765462 0.0 28 0.0 0.0 0.0 0.0942475505205144 0.0 29 0.0 0.0 0.0 0.12199556031843234 0.0 30 0.0 0.0 0.0 0.17270744029393753 0.0 31 0.0 0.0 0.0 0.21432945499081446 0.0 32 0.0 0.0 0.0 0.2583435394978567 0.0 33 0.0 0.0 0.0 0.29518141457440294 0.0 34 0.0 0.0 0.0 0.3669435088793631 0.0 35 0.0 0.0 0.0 0.47315140845070425 0.0 36 0.0 0.0 0.0 0.6702579608083282 0.0 37 0.0 0.0 0.0 1.013280771586038 0.0 38 0.0 0.0 0.0 1.4395476117575015 0.0 39 0.0 0.0 0.0 1.9964214635639927 0.0 40 0.0 0.0 0.0 2.653762247397428 0.0 41 0.0 0.0 0.0 3.5010333741579913 0.0 42 0.0 0.0 0.0 4.379879822412737 0.0 43 0.0 0.0 0.0 5.289823178199633 0.0 44 0.0 0.0 0.0 6.172496938150643 0.0 45 0.0 0.0 0.0 7.05612752602572 0.0 46 0.0 0.0 0.0 7.9622435701163505 0.0 47 0.0 0.0 0.0 8.771241579914268 0.0 48 0.0 0.0 0.0 9.557754133496632 0.0 49 0.0 0.0 0.0 10.313648193508879 0.0 50 0.0 0.0 0.0 11.01069733619106 0.0 51 0.0 0.0 0.0 11.829742039191672 0.0 52 0.0 0.0 0.0 12.721027250459278 0.0 53 0.0 0.0 0.0 13.630013778322107 0.0 54 0.0 0.0 0.0 14.493550979791793 0.0 55 0.0 0.0 0.0 15.224567513778322 0.0 56 0.0 0.0 0.0 15.916832516840172 0.0 57 0.0 0.0 0.0 16.572738058787507 0.0 58 0.0 0.0 0.0 17.191327311696263 0.0 59 0.0 0.0 0.0 17.74246019595836 0.0 60 0.0 0.0 0.0 18.3318661971831 0.0 61 0.0 0.0 0.0 18.943757654623393 0.0 62 0.0 0.0 0.0 19.64032838334354 0.0 63 0.0 0.0 0.0 20.29336344151868 0.0 64 0.0 0.0 0.0 20.92965401102266 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTCGAT 15 0.0022223203 70.000244 43 ACGCGTG 25 2.3864557E-4 56.000195 34 CTCGATC 20 0.006944025 52.50018 44 TCCGGTG 20 0.006944025 52.50018 8 GCCGTAT 55 2.2664608E-9 50.92145 54 TCGGTGG 105 0.0 50.00017 45 GCGGTCG 30 5.8682053E-4 46.66683 48 GGACGCT 30 5.8682053E-4 46.66683 13 CGGTGGA 30 5.875133E-4 46.655663 46 TCGCCGT 70 3.8016879E-10 45.010925 52 CCTGACG 70 3.8198777E-10 45.000153 11 CTCGGTG 125 0.0 44.800156 44 AGTGTCG 40 4.5817545E-5 43.750153 35 CGGTGGT 100 0.0 41.9901 46 TAAACGT 35 0.0012533914 40.000137 4 GGCTTAT 35 0.0012533914 40.000137 1 CTAAACG 35 0.0012533914 40.000137 3 GGTGGAC 35 0.0012548675 39.99057 47 GATATGC 35 0.0012548675 39.99057 26 TGGTCGC 80 1.4097168E-9 39.38456 49 >>END_MODULE