SRR1779870_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779870_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	209024
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	23040	11.022657685241887	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	2868	1.372091243110839	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	1624	0.7769442743417023	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	628	0.30044396815676666	RNA PCR Primer, Index 42 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	574	0.27460961420698105	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT	421	0.2014122780159216	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCGT	389	0.18610303123086344	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCGT	268	0.1282149418248622	No Hit
CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	266	0.12725811390079608	RNA PCR Primer, Index 32 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGAGCT	35	2.9695912E-7	59.984005	34
CCGATCT	25	2.389644E-4	55.985073	34
TCTCGTA	3540	0.0	54.85825	38
ATCTCGT	3535	0.0	54.83686	37
CGTCTTC	3735	0.0	54.549717	48
CGATCTC	3545	0.0	54.484764	35
CGTATGC	3825	0.0	54.429928	41
TATGCCG	3800	0.0	54.4197	43
CTCGTAT	3740	0.0	54.357166	39
TCTTCTG	3770	0.0	54.33486	50
CCGTCTT	3750	0.0	54.33152	47
TCGTATG	3845	0.0	54.237812	40
ATGCCGT	3795	0.0	54.214794	44
CTGCTTG	3795	0.0	54.174435	54
TCGATCT	3540	0.0	54.166344	34
GCCGTCT	3775	0.0	54.157173	46
CTCGATC	3535	0.0	54.14398	33
ACTCGAT	3590	0.0	54.094208	32
GATCTCG	3575	0.0	54.027557	36
GTCTTCT	3800	0.0	53.99805	49