##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779869_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 193522 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.68569464970391 34.0 23.0 34.0 12.0 34.0 2 29.283363131840307 34.0 27.0 34.0 12.0 34.0 3 28.895179876189786 34.0 23.0 34.0 11.0 34.0 4 29.188257665795103 34.0 24.0 34.0 12.0 34.0 5 29.594196008722523 34.0 31.0 34.0 11.0 34.0 6 32.0933123882556 37.0 28.0 38.0 12.0 38.0 7 32.44175855975031 37.0 31.0 38.0 12.0 38.0 8 31.687332706358966 37.0 27.0 38.0 11.0 38.0 9 32.54719360072757 38.0 31.0 38.0 12.0 38.0 10-11 31.22950878969833 37.0 27.0 38.0 11.5 38.0 12-13 31.983929475718526 37.0 29.5 38.0 11.0 38.0 14-15 30.792685069397795 37.0 25.5 38.0 11.0 38.0 16-17 31.38227953410982 37.0 28.0 38.0 11.0 38.0 18-19 32.13736939469415 37.5 31.0 38.0 11.0 38.0 20-21 30.988768718802 37.0 27.0 38.0 11.0 38.0 22-23 31.81729467450729 37.0 28.5 38.0 11.0 38.0 24-25 32.123081613459966 37.5 29.5 38.0 11.0 38.0 26-27 31.059778733167292 37.0 25.5 38.0 11.0 38.0 28-29 32.13900228397805 37.5 29.5 38.0 11.0 38.0 30-31 32.45353758229039 38.0 31.0 38.0 11.0 38.0 32-33 32.58457694732382 38.0 32.5 38.0 11.0 38.0 34-35 32.54054319405546 38.0 32.0 38.0 11.0 38.0 36-37 32.061375450853134 38.0 29.0 38.0 11.0 38.0 38-39 32.013026942673186 37.5 29.0 38.0 11.0 38.0 40-41 32.029831233658186 37.5 29.0 38.0 11.0 38.0 42-43 32.374569816351624 38.0 32.5 38.0 11.0 38.0 44-45 32.418301278407625 38.0 31.0 38.0 11.0 38.0 46-47 32.36870226640899 38.0 31.5 38.0 11.0 38.0 48-49 32.07680005374066 37.5 29.0 38.0 11.0 38.0 50-51 31.4991887227292 37.5 28.5 38.0 11.0 38.0 52-53 32.03300916691642 37.0 29.5 38.0 11.0 38.0 54-55 32.154132346709936 37.5 31.0 38.0 11.0 38.0 56-57 32.221106644205825 38.0 31.0 38.0 11.0 38.0 58-59 32.39291915131096 38.0 31.5 38.0 11.0 38.0 60-61 32.30744049772119 38.0 31.0 38.0 11.0 38.0 62-63 32.28359049617098 38.0 31.0 38.0 11.0 38.0 64-65 32.26339640971052 38.0 31.0 38.0 11.0 38.0 66-67 32.12826965409617 38.0 31.0 38.0 11.0 38.0 68-69 31.575105156002934 37.0 27.0 38.0 11.0 38.0 70-71 31.62887682020649 37.0 27.0 38.0 11.0 38.0 72-73 31.74576017197011 37.0 27.5 38.0 11.0 38.0 74-75 31.79530234288608 37.0 28.5 38.0 11.0 38.0 76 30.98534016804291 37.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 91.0 13 835.0 14 2468.0 15 3901.0 16 5071.0 17 5893.0 18 6044.0 19 5309.0 20 4220.0 21 3061.0 22 2341.0 23 1853.0 24 1727.0 25 1688.0 26 1807.0 27 2005.0 28 2368.0 29 2832.0 30 3454.0 31 4392.0 32 5649.0 33 7441.0 34 10465.0 35 16149.0 36 29379.0 37 63078.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.85800064075402 17.867735968003636 11.560959477475429 30.71330391376691 2 21.12007937082089 25.666849247114023 28.111015801820983 25.10205558024411 3 18.617521522100848 24.170378561610566 30.314899597978524 26.89720031831006 4 13.625324252539764 23.408191316749516 28.9977366914356 33.96874773927512 5 14.110540403675035 32.18187079505172 34.07416211076777 19.633426690505473 6 25.002842112878387 37.974245289843836 19.28554449715272 17.737368100125053 7 25.829405928314525 30.846665839844555 18.90425399975195 24.419674232088965 8 23.205796022985655 36.59514655421886 18.70840051262971 21.49065691016578 9 23.032799169039485 19.99421221532626 18.882647498075045 38.090341117559205 10-11 22.797820363427785 27.276203567100822 23.782739117965466 26.143236951505926 12-13 22.99350978183359 23.690588150184475 24.719153377910523 28.59674869007141 14-15 25.116460530021367 25.165034195343644 21.477827930374303 28.240677344260686 16-17 25.490191012368136 25.62660996323406 21.909968659812993 26.973230364584815 18-19 21.862073063914778 26.106435918569833 24.695179455909216 27.336311561606173 20-21 24.54578807577433 25.275162513822718 23.59059951840101 26.588449892001943 22-23 25.299520715180794 25.138294986241554 22.814215768599738 26.74796852997791 24-25 21.900029971372174 28.06276418731074 22.51082586632768 27.526379974989407 26-27 24.15893923382794 27.71515162476327 23.006348164664725 25.119560976744065 28-29 22.34639036742287 27.37248720996331 24.666683892305308 25.614438530308508 30-31 22.936787222058587 26.591429353920248 24.47382971357114 25.997953710450027 32-33 21.711226630563967 27.308523061977453 24.669546614855157 26.310703692603425 34-35 21.990832846726644 27.84148162693717 24.653906375150502 25.513779151185684 36-37 24.17723546983369 25.548079010201867 24.239769708621456 26.034915811342984 38-39 24.07159541921614 24.767188275177773 25.803859351744666 25.35735695386142 40-41 22.092347282831962 26.551329452587463 25.334914569332806 26.021408695247768 42-43 20.418972617958776 26.461210928012978 25.910624686726507 27.20919176730174 44-45 20.3776529499615 24.788771697732944 27.164347246409765 27.669228105895787 46-47 21.28698033744154 25.11484897811539 26.44730382657675 27.150866857866312 48-49 21.05657510922559 25.996853062837978 26.623915172216005 26.322656655720422 50-51 23.535415127196814 25.4670084074432 24.99082777401702 26.006748691342967 52-53 18.777680735500073 26.941462834817393 26.242758435356922 28.03809799432561 54-55 19.729977648867585 25.7588403250604 25.897339827650807 28.613842198421207 56-57 19.91131920435342 26.32543164705457 25.483584233836172 28.27966491475584 58-59 19.676587475904267 26.464477852598723 25.693156036982103 28.16577863451491 60-61 18.94961533790052 26.01618242570995 25.78489416300783 29.24930807338169 62-63 19.750700251160193 25.971049394838296 25.26976465359531 29.008485700406194 64-65 20.380238159227638 25.59022968307457 24.642864526265736 29.386667631432058 66-67 19.716668346396464 27.96207428540418 23.265032935625 29.05622443257435 68-69 20.01167825880262 29.107284959849526 22.618875373342565 28.262161408005294 70-71 20.60789425409711 29.134897853199014 22.391167860769272 27.866040031934602 72-73 21.79888328781564 27.80205100909751 21.913603373390625 28.485462329696226 74-75 21.48061827220721 27.241908561447392 23.185207770261542 28.092265396083864 76 20.89488996026271 28.264632778871544 22.364497909787566 28.47597935107818 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 0.5 14 6.5 15 10.0 16 17.5 17 28.0 18 39.5 19 53.5 20 76.0 21 96.0 22 158.0 23 222.0 24 283.0 25 342.0 26 415.0 27 587.0 28 808.0 29 930.0 30 1130.5 31 1492.0 32 1973.5 33 2294.0 34 2652.5 35 3440.5 36 4356.5 37 4843.0 38 5335.5 39 6609.5 40 7922.0 41 8922.0 42 9391.0 43 9834.5 44 10887.5 45 11678.5 46 11860.0 47 12126.5 48 11968.0 49 11075.0 50 10607.0 51 10219.5 52 9215.5 53 8278.5 54 7958.0 55 7281.5 56 6172.0 57 5313.0 58 4887.0 59 4489.5 60 3760.5 61 3193.0 62 2957.0 63 2783.0 64 2490.5 65 2241.0 66 1969.5 67 1829.0 68 1665.0 69 1435.0 70 1337.0 71 1305.0 72 1188.5 73 1010.0 74 882.0 75 816.0 76 780.5 77 707.0 78 651.5 79 634.0 80 545.5 81 437.0 82 369.0 83 321.0 84 285.5 85 215.0 86 151.0 87 122.0 88 116.0 89 87.0 90 51.5 91 34.5 92 30.0 93 24.0 94 15.5 95 12.0 96 11.0 97 10.0 98 9.5 99 9.5 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.002066948460640134 7 0.005167371151600334 8 0.005167371151600334 9 0.005684108266760368 10-11 0.0018085799030601172 12-13 0.0 14-15 7.751056727400503E-4 16-17 2.5836855758001675E-4 18-19 0.0033587912485402173 20-21 0.0 22-23 0.0023253170182201506 24-25 0.002066948460640134 26-27 7.751056727400503E-4 28-29 0.006200845381920402 30-31 5.167371151600335E-4 32-33 0.0 34-35 0.002583685575800167 36-37 0.014468639224480937 38-39 0.009301268072880602 40-41 0.0012918427879000836 42-43 5.167371151600335E-4 44-45 0.005684108266760368 46-47 0.0036171598061202344 48-49 2.5836855758001675E-4 50-51 0.0015502113454801006 52-53 0.010851479418360703 54-55 0.010076373745620653 56-57 0.009818005188040636 58-59 0.011884953648680769 60-61 0.020927853163981356 62-63 0.010334742303200669 64-65 0.019636010376081273 66-67 0.01989437893366129 68-69 0.0 70-71 7.751056727400503E-4 72-73 0.0038755283637002514 74-75 0.007751056727400503 76 5.167371151600335E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 193522.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.40154681877399 #Duplication Level Percentage of deduplicated Percentage of total 1 75.46632189561002 45.58282575218357 2 10.360173478270967 12.515410067968089 3 5.828197502969501 10.56096433034022 4 3.2999163509690845 7.97280207884388 5 1.8140485333002134 5.478566870783055 6 1.0148320128002108 3.6778454000605545 7 0.63771573644318 2.6963311838289172 8 0.3471022687440444 1.6772411149156854 9 0.26081836245525025 1.4178449277933085 >10 0.9688904601380691 8.351283086267317 >50 0.001983398299445715 0.06888518701544208 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0031004226909602008 0.0 2 0.0 0.0 0.0 0.0031004226909602008 0.0 3 0.0 0.0 0.0 0.0031004226909602008 0.0 4 0.0 0.0 0.0 0.007751056727400502 0.0 5 0.0 0.0 0.0 0.01033474230320067 0.0 6 0.0 0.0 0.0 0.01033474230320067 0.0 7 0.0 0.0 0.0 0.01033474230320067 0.0 8 0.0 0.0 0.0 0.01033474230320067 0.0 9 0.0 0.0 0.0 0.012918427879000837 0.0 10 0.0 0.0 0.0 0.014468639224480937 0.0 11 0.0 0.0 0.0 0.016535587685121072 0.0 12 0.0 0.0 0.0 0.016535587685121072 0.0 13 0.0 0.0 0.0 0.01808579903060117 0.0 14 0.0 0.0 0.0 0.019636010376081273 0.0 15 0.0 0.0 0.0 0.022736433067041473 0.0 16 0.0 0.0 0.0 0.022736433067041473 0.0 17 0.0 0.0 0.0 0.024803381527681606 0.0 18 0.0 0.0 0.0 0.027387067103481776 0.0 19 0.0 0.0 0.0 0.02842054133380184 0.0 20 0.0 0.0 0.0 0.031004226909602008 0.0 21 0.0 0.0 0.0 0.031520964024762045 0.0 22 0.0 0.0 0.0 0.04185570632796271 0.0 23 0.0 0.0 0.0 0.048056551709883114 0.0 24 0.0 0.0 0.0 0.05684108266760368 0.0 25 0.0 0.0 0.0 0.05787455689792375 0.0 26 0.0 0.0 0.0 0.06614235074048429 0.0 27 0.0 0.0 0.0 0.0893955209226858 0.0 28 0.0 0.0 0.0 0.12763406744452827 0.0 29 0.0 0.0 0.0 0.15812155723897026 0.0 30 0.0 0.0 0.0 0.18757557280309214 0.0 31 0.0 0.0 0.0 0.23046475336137492 0.0 32 0.0 0.0 0.0 0.2749041452651378 0.0 33 0.0 0.0 0.0 0.33071175370242145 0.0 34 0.0 0.0 0.0 0.4237244344312275 0.0 35 0.0 0.0 0.0 0.5100195326629531 0.0 36 0.0 0.0 0.0 0.7239486983392069 0.0 37 0.0 0.0 0.0 1.1326877564307933 0.0 38 0.0 0.0 0.0 1.6142867477599445 0.0 39 0.0 0.0 0.0 2.191998842508862 0.0 40 0.0 0.0 0.0 2.9112969068116286 0.0 41 0.0 0.0 0.0 3.6466138216843564 0.0 42 0.0 0.0 0.0 4.490962267855851 0.0 43 0.0 0.0 0.0 5.253149512716901 0.0 44 0.0 0.0 0.0 5.994150535856388 0.0 45 0.0 0.0 0.0 6.832814873761123 0.0 46 0.0 0.0 0.0 7.650292989944296 0.0 47 0.0 0.0 0.0 8.522028503219273 0.0 48 0.0 0.0 0.0 9.301784809995763 0.0 49 0.0 0.0 0.0 10.02004940006821 0.0 50 0.0 0.0 0.0 10.773452113971539 0.0 51 0.0 0.0 0.0 11.56974400843315 0.0 52 0.0 0.0 0.0 12.400140552495323 0.0 53 0.0 0.0 0.0 13.27084259153998 0.0 54 0.0 0.0 0.0 14.011843614679467 0.0 55 0.0 0.0 0.0 14.693936606690713 0.0 56 0.0 0.0 0.0 15.44940626905468 0.0 57 0.0 0.0 0.0 16.03952005456744 0.0 58 0.0 0.0 0.0 16.66167154122012 0.0 59 0.0 0.0 0.0 17.230599105011315 0.0 60 0.0 0.0 0.0 17.8708363906946 0.0 61 0.0 0.0 0.0 18.460950176207355 0.0 62 0.0 0.0 0.0 19.019542997695353 0.0 63 0.0 0.0 0.0 19.61689110282035 0.0 64 0.0 0.0 0.0 20.21320573371503 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGATTT 15 0.0022210572 70.00828 53 ATGATAC 15 0.0022233366 69.99018 27 CTGTGTA 65 0.0 59.23777 34 GCAGTGT 25 2.384656E-4 56.006622 31 TTACGCT 25 2.3877059E-4 55.99214 13 CCGTATG 20 0.0069400934 52.506207 24 GTGTACC 20 0.0069400934 52.506207 36 CGTAAGA 20 0.0069400934 52.506207 32 TACGCTT 20 0.0069471956 52.49263 14 TTAGACC 20 0.0069543035 52.479065 4 CGACGAT 115 0.0 48.68882 22 GACGATC 45 1.6771064E-6 46.67218 23 GCCGTAT 45 1.6771064E-6 46.67218 54 CGACGAG 60 4.9094524E-9 46.66012 22 GATATGC 30 5.8712746E-4 46.66012 26 TAGATCC 30 5.8712746E-4 46.66012 39 TCGGTGG 75 1.4551915E-11 46.66012 45 ACATCTT 70 3.8198777E-10 44.982056 8 ACTGTGT 40 4.5773755E-5 43.755173 33 GTAGATC 130 0.0 40.38939 38 >>END_MODULE