##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779869_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 193522 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.5419797232356 34.0 34.0 34.0 34.0 34.0 2 33.62838333626151 34.0 34.0 34.0 34.0 34.0 3 33.747708270894265 34.0 34.0 34.0 34.0 34.0 4 33.53501410692324 34.0 34.0 34.0 34.0 34.0 5 33.595405173572 34.0 34.0 34.0 34.0 34.0 6 37.27148851293393 38.0 38.0 38.0 36.0 38.0 7 37.33282520850343 38.0 38.0 38.0 37.0 38.0 8 37.23234567646056 38.0 38.0 38.0 36.0 38.0 9 37.144965430286994 38.0 38.0 38.0 36.0 38.0 10-11 37.103218238753215 38.0 38.0 38.0 35.5 38.0 12-13 37.2674347102655 38.0 38.0 38.0 36.5 38.0 14-15 37.28796725953639 38.0 38.0 38.0 36.0 38.0 16-17 37.18794245615486 38.0 38.0 38.0 36.0 38.0 18-19 37.04344725664266 38.0 38.0 38.0 35.5 38.0 20-21 37.06827389134052 38.0 38.0 38.0 35.5 38.0 22-23 37.078084145471834 38.0 38.0 38.0 36.0 38.0 24-25 37.25040305494983 38.0 38.0 38.0 36.0 38.0 26-27 37.1385165510898 38.0 38.0 38.0 36.0 38.0 28-29 36.626959725509245 38.0 37.0 38.0 34.0 38.0 30-31 36.85901344549974 38.0 37.0 38.0 35.0 38.0 32-33 36.900047539814594 38.0 37.5 38.0 35.5 38.0 34-35 37.002873058360294 38.0 38.0 38.0 36.0 38.0 36-37 36.958599022333374 38.0 38.0 38.0 35.5 38.0 38-39 36.23048800653156 38.0 37.0 38.0 34.0 38.0 40-41 36.716735048211575 38.0 37.0 38.0 35.0 38.0 42-43 37.12088806440612 38.0 38.0 38.0 36.0 38.0 44-45 36.885160343526834 38.0 37.5 38.0 35.0 38.0 46-47 37.041462986120436 38.0 38.0 38.0 36.0 38.0 48-49 36.67867477599446 38.0 37.0 38.0 34.5 38.0 50-51 36.826244561341866 38.0 37.0 38.0 34.5 38.0 52-53 36.73884622936927 38.0 37.0 38.0 34.5 38.0 54-55 36.749439340230055 38.0 37.0 38.0 34.5 38.0 56-57 36.61032079040109 38.0 37.0 38.0 34.0 38.0 58-59 36.685748907101 38.0 37.0 38.0 34.5 38.0 60-61 36.34333822511135 38.0 37.0 38.0 34.0 38.0 62-63 36.18586517295191 38.0 37.0 38.0 34.0 38.0 64-65 36.56932028399872 38.0 37.0 38.0 34.0 38.0 66-67 36.32196597802834 38.0 37.0 38.0 33.5 38.0 68-69 36.36665340374738 38.0 37.0 38.0 34.0 38.0 70-71 35.21841702752142 38.0 36.5 38.0 28.5 38.0 72-73 33.23123469166296 38.0 34.0 38.0 20.0 38.0 74-75 32.92403964407148 38.0 34.0 38.0 11.0 38.0 76 32.690092082553925 38.0 32.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 2.0 22 9.0 23 34.0 24 48.0 25 107.0 26 218.0 27 414.0 28 741.0 29 1154.0 30 1945.0 31 3065.0 32 4624.0 33 7353.0 34 12588.0 35 25801.0 36 33325.0 37 102094.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.57167156971724 13.827119643051025 10.15681144883852 38.44439733839321 2 19.607589834747472 18.02430731389713 39.87453622843915 22.49356662291626 3 17.843966060706276 17.30914314651564 41.225287047467475 23.62160374531061 4 12.251837000444393 29.800229431279128 31.181467740101898 26.766465828174574 5 11.950579262306094 28.339930343836876 44.74271659036182 14.96677380349521 6 23.039241016525253 45.549343227126634 18.118353468856256 13.29306228749186 7 23.811246266574344 26.204772583995616 18.35450233048439 31.62947881894565 8 21.29008588170854 44.35051311995535 15.963042961523755 18.39635803681235 9 20.99347877760668 17.528756420458656 16.433790473434545 45.04397432850012 10-11 20.752679281942104 29.63203150029454 28.485391841754428 21.12989737600893 12-13 21.356744969564183 18.873306394105064 29.875931418650076 29.89401721768068 14-15 19.71377931191286 18.565589442027264 20.109599942125442 41.61103130393444 16-17 28.830313866123745 28.631111708229557 19.263701284608466 23.274873141038228 18-19 29.072146836018643 22.71524684531991 20.18375171815091 28.028854600510538 20-21 19.806533624084082 20.722708529262825 20.429460216409502 39.04129763024359 22-23 19.80575851841134 29.65605977614948 20.17109165882949 30.36709004660969 24-25 28.66466343358972 29.74826956317289 19.975661493226816 21.611405510010567 26-27 28.80215169334753 30.66137183369333 20.697388410619983 19.839088062339165 28-29 19.78018003121092 30.797273694980415 20.97694318992156 28.445603083887107 30-31 19.225204369529045 30.560349727679544 29.9221793904569 20.292266512334514 32-33 26.87498062235818 32.057595518855734 21.811731999462594 19.255691859323488 34-35 21.17588697925817 21.473785926147933 38.13674931015595 19.213577784437945 36-37 19.381000609749798 37.32262998522132 23.717200111615217 19.579169293413667 38-39 19.021868314713572 23.01727968913095 29.918820599208356 28.042031396947113 40-41 18.94254916753651 19.937784851334733 31.388937691838652 29.73072828929011 42-43 28.00419592705701 19.56712708181541 30.676257357082694 21.752419634044884 44-45 19.45566912289042 28.311251433945493 32.23742003493143 19.995659408232655 46-47 27.200525004909004 19.787155982265585 24.469052614173066 28.54326639865235 48-49 26.408625375926253 19.193425036946703 23.350833496966754 31.047116090160294 50-51 18.959712033158567 20.084291801575755 32.02209881934628 28.93389734591939 52-53 16.951815822935295 19.636525280927916 40.91287357985382 22.498785316282966 54-55 16.164195887347972 19.830944410696514 33.99180571531969 30.013053986635818 56-57 25.132546627202107 19.824994506843826 25.03793509028164 30.004523775672425 58-59 17.129255111561395 20.013594646913937 39.75426254209559 23.102887699429075 60-61 25.453384781985044 28.503345626907677 24.54493529720384 21.498334293903437 62-63 17.030729072442043 39.54927247822603 21.36071123975913 22.05928720957279 64-65 16.257147951286697 40.94868462192409 20.421241398556585 22.37292602823263 66-67 16.149734555360844 40.71564081489178 20.09754508940341 23.037079540343967 68-69 16.289934162248198 40.94420844831685 19.970181803148222 22.79567558628673 70-71 16.874210244788586 39.38401031559199 19.87146855062315 23.870310888996272 72-73 17.148357753831046 35.98444323849394 20.373930795668915 26.4932682120061 74-75 17.685287110394476 34.79382109283348 20.78921120224086 26.73168059453118 76 17.800183981229782 35.134730074729454 20.82140383879937 26.2436821052414 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.0 12 0.0 13 6.0 14 11.0 15 8.5 16 20.0 17 33.0 18 42.0 19 64.0 20 97.5 21 118.0 22 165.0 23 227.0 24 286.5 25 331.0 26 423.5 27 623.5 28 838.5 29 946.0 30 1079.5 31 1373.5 32 1795.0 33 2056.0 34 2426.5 35 3108.5 36 8106.0 37 12792.0 38 14982.5 39 16611.5 40 14377.0 41 11513.5 42 10323.0 43 9654.0 44 9292.5 45 9428.0 46 9256.0 47 9474.0 48 9318.0 49 8513.0 50 8082.0 51 7627.0 52 6660.5 53 5782.5 54 5416.0 55 5001.5 56 4333.5 57 3730.5 58 3381.0 59 3175.5 60 2753.5 61 2395.0 62 2253.0 63 2120.0 64 1913.0 65 1784.5 66 1641.0 67 1552.0 68 1450.5 69 1252.0 70 1160.0 71 1165.0 72 1122.5 73 1018.0 74 866.5 75 777.0 76 745.0 77 656.0 78 555.0 79 511.0 80 471.5 81 398.5 82 317.0 83 269.0 84 225.0 85 170.0 86 126.5 87 94.0 88 81.0 89 46.5 90 24.5 91 23.5 92 23.0 93 15.5 94 6.0 95 4.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.054257397091803515 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 7.751056727400503E-4 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 5.167371151600335E-4 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.014210270666900922 52-53 0.028937278448961875 54-55 0.04883165738262317 56-57 0.051415342958423337 58-59 0.032812806812662125 60-61 0.031262595467182026 62-63 0.02945401556412191 64-65 0.011626585091100754 66-67 0.03772180940668245 68-69 0.008267793842560536 70-71 0.014727007782060954 72-73 0.01911927326092124 74-75 0.012918427879000837 76 0.012401690763840805 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 193522.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.868376722026436 #Duplication Level Percentage of deduplicated Percentage of total 1 38.85459739118276 10.051053626977811 2 16.997263338726754 8.79383222579345 3 13.942989552745649 10.8204751914511 4 10.26148099318831 10.617914242308368 5 6.861628812848325 8.874959952873574 6 4.126965102574859 6.405473279523775 7 2.5908391762050296 4.691456268537944 8 1.4382453406843652 2.976405783321793 9 1.1186352649767284 2.604355060406569 >10 3.7354427598330036 14.81226940606236 >50 0.03795369649028185 0.6247351722284805 >100 0.02397075567807275 1.187978627752917 >500 0.003995125946345458 0.7270491210301672 >1k 0.003995125946345458 2.767127251681979 >5k 0.0 0.0 >10k+ 0.001997562973172729 14.04491479004971 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT 27180 14.04491479004971 No Hit TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG 3419 1.7667241967321545 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 1936 1.0004030549498248 No Hit ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT 742 0.38341893944874483 RNA PCR Primer, Index 15 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 665 0.3436301815814223 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTAACCTCGTATGCCGT 339 0.17517388203925136 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTAAACTCGTATGCCGT 309 0.15967176858445034 No Hit CTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC 292 0.1508872376267298 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTATCTCGTATGCCGTC 211 0.10903153129876707 No Hit CTTTACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC 208 0.10748131995328696 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATATCGTATGCCGT 201 0.10386416014716672 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0031004226909602008 0.0 2 0.0 0.0 0.0 0.0031004226909602008 0.0 3 0.0 0.0 0.0 0.0031004226909602008 0.0 4 0.0 0.0 0.0 0.007751056727400502 0.0 5 0.0 0.0 0.0 0.010851479418360703 0.0 6 0.0 0.0 0.0 0.010851479418360703 0.0 7 0.0 0.0 0.0 0.010851479418360703 0.0 8 0.0 0.0 0.0 0.010851479418360703 0.0 9 0.0 0.0 0.0 0.013435164994160871 0.0 10 0.0 0.0 0.0 0.014985376339640972 0.0 11 0.0 0.0 0.0 0.017052324800281106 0.0 12 0.0 0.0 0.0 0.017052324800281106 0.0 13 0.0 0.0 0.0 0.01911927326092124 0.0 14 0.0 0.0 0.0 0.02066948460640134 0.0 15 0.0 0.0 0.0 0.024286644412521572 0.0 16 0.0 0.0 0.0 0.024286644412521572 0.0 17 0.0 0.0 0.0 0.026353592873161708 0.0 18 0.0 0.0 0.0 0.028937278448961875 0.0 19 0.0 0.0 0.0 0.029970752679281943 0.0 20 0.0 0.0 0.0 0.033071175370242144 0.0 21 0.0 0.0 0.0 0.033587912485402174 0.0 22 0.0 0.0 0.0 0.03617159806120234 0.0 23 0.0 0.0 0.0 0.04340591767344281 0.0 24 0.0 0.0 0.0 0.04960676305536321 0.0 25 0.0 0.0 0.0 0.05322392286148345 0.0 26 0.0 0.0 0.0 0.060974979588883954 0.0 27 0.0 0.0 0.0 0.08732857246204566 0.0 28 0.0 0.0 0.0 0.1281508045596883 0.0 29 0.0 0.0 0.0 0.16122197992993045 0.0 30 0.0 0.0 0.0 0.19170946972437242 0.0 31 0.0 0.0 0.0 0.23563212451297527 0.0 32 0.0 0.0 0.0 0.28213846487737826 0.0 33 0.0 0.0 0.0 0.3441469186965823 0.0 34 0.0 0.0 0.0 0.44594413038310887 0.0 35 0.0 0.0 0.0 0.5430907080331951 0.0 36 0.0 0.0 0.0 0.77252198716425 0.0 37 0.0 0.0 0.0 1.2153656948563987 0.0 38 0.0 0.0 0.0 1.7041990057977905 0.0 39 0.0 0.0 0.0 2.2927625799650686 0.0 40 0.0 0.0 0.0 3.045648556753237 0.0 41 0.0 0.0 0.0 3.8031851675778463 0.0 42 0.0 0.0 0.0 4.681638263349903 0.0 43 0.0 0.0 0.0 5.476896683581195 0.0 44 0.0 0.0 0.0 6.244768036709004 0.0 45 0.0 0.0 0.0 7.1020349107595 0.0 46 0.0 0.0 0.0 7.951033990967435 0.0 47 0.0 0.0 0.0 8.848606360000414 0.0 48 0.0 0.0 0.0 9.655232996765225 0.0 49 0.0 0.0 0.0 10.417420241626274 0.0 50 0.0 0.0 0.0 11.197693285517925 0.0 51 0.0 0.0 0.0 12.005353396513058 0.0 52 0.0 0.0 0.0 12.836783414805552 0.0 53 0.0 0.0 0.0 13.706451979619889 0.0 54 0.0 0.0 0.0 14.443319105838096 0.0 55 0.0 0.0 0.0 15.120761463812899 0.0 56 0.0 0.0 0.0 15.88243197155879 0.0 57 0.0 0.0 0.0 16.48184702514443 0.0 58 0.0 0.0 0.0 17.099864614875827 0.0 59 0.0 0.0 0.0 17.683777555006667 0.0 60 0.0 0.0 0.0 18.330732423187026 0.0 61 0.0 0.0 0.0 18.928597265427186 0.0 62 0.0 0.0 0.0 19.493390932297103 0.0 63 0.0 0.0 0.0 20.100040305494982 0.0 64 0.0 0.0 0.0 20.715474209650584 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCTTA 15 0.0022125114 70.07634 48 AAACGAC 15 0.0022193342 70.02198 70 TCTTCGC 15 0.0022261727 69.9677 29 CTGCAAG 15 0.0022261727 69.9677 28 ATCGTAT 45 2.6977432E-8 54.41932 39 TCTTTAT 120 0.0 52.502907 1 CGAAACG 20 0.0069560297 52.475777 16 ATATCGT 40 7.475519E-7 52.475777 37 AATCTCG 3840 0.0 52.20246 36 TCTCGTA 3885 0.0 51.958 38 CCGTCTT 4020 0.0 51.9337 47 ATCTCGT 3895 0.0 51.914417 37 TCGTATG 4050 0.0 51.914307 40 TATGCCG 4025 0.0 51.889088 43 CGTCTTC 4015 0.0 51.837296 48 CGTATGC 4050 0.0 51.82793 41 ATGCCGT 4030 0.0 51.737904 44 AGTTAAT 3855 0.0 51.727097 32 TGCCGTC 4035 0.0 51.71388 45 CTCGTAT 4020 0.0 51.692554 39 >>END_MODULE